DMR 32319 chr12:110173051-110173350 (300bp)
| DMR Stats | |
|---|---|
| Position | chr12:110173051-110173350 (View on UCSC) |
| Width | 300bp |
| Genomic Context | intron |
| Nearest Genes | FAM222A, FAM222A-AS1 (0bp away) |
| ANODEV p-value | 0.0378608546401 |
| Frequencies | Benign: 2.0 (28.57%), Low: 6.0 (100.0%), High: 8.0 (88.89 %) |
| Frequent? |
Region Count Boxplot
Region Overview
Gene Overlaps
| Dmrid | Gene Symbol | Gene Id | Isoform Id | Isoform Chr | Isoform Start | Isoform End | Isoform Strand | Overlap Bp | Query Overlap Per | Isoform Overlap Per | Noncoding | Promoter Per | Exonintron Per | End Per |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 32319 | FAM222A | 7001 | uc001tpd.2 | chr12 | 110152187 | 110208312 | + | 300 | 100.0 | 0.03 | 0 | 0.0 | E1 (0), I1 (100), E2 (0), I2 (0), E3 (0) | 0.0 |
| 32319 | FAM222A-AS1 | 7002 | uc031qjl.1 | chr12 | 110172014 | 110211292 | - | 300 | 100.0 | 0.03 | 1 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (100), E4 (0) | 0.0 |
| 32319 | FAM222A-AS1 | 7002 | uc031qjm.1 | chr12 | 110172014 | 110211292 | - | 300 | 100.0 | 0.02 | 1 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (100), E3 (0) | 0.0 |
- 3 geness
Feature Overlaps
| Dmrid | Feature Chr | Feature Start | Feature End | Set | Name | Fields |
|---|---|---|---|---|---|---|
| 32319 | chr12 | 110172858 | 110173361 | wgEncodeRegTfbsClusteredV3 | REST | score:1000, expCount:7, expNums:59,144,188,226,248,252,258, expScores:306,697,664,268,229,1000,200, srow:1024231 |
| 32319 | chr12 | 110173201 | 110173226 | phastConsElements100way | lod=23 | score:304, srow:2206937 |
| 32319 | chr12 | 110173232 | 110173248 | phastConsElements100way | lod=28 | score:323, srow:2206938 |
| 32319 | chr12 | 110173304 | 110173309 | phastConsElements100way | lod=13 | score:247, srow:2206939 |
- 4 featuress
Omics Overlaps
| Dmrid | Omic Set | Data | Plot |
|---|---|---|---|
| 32319 | cellmeth_recounts | PrEC: 49, LNCaP: 3, DU145: 0 |  |
| 32319 | cellmeth_diffreps_PrECvsLNCaP | A=73, B=2, Length=440, Event=Down, log2FC=-5.19, padj=0 |  |
| 32319 | cellmeth_diffreps_PrECvsDU145 | A=73, B=0, Length=440, Event=Down, log2FC=-Inf, padj=0 |  |
| 32319 | cellexp | id=ENSG00000139438, name=FAM222A, PrEC=29, str=30, LNCaP=321, str=279, DU145=412, str=252 |  |
| 32319 | cellexp | id=ENSG00000255650, name=FAM222A-AS1, PrEC=0, str=0, LNCaP=133, str=64, DU145=25, str=20 |  |
| 32319 | tcgaexp | gene=ZNF26, entrez=7574, pos=chr12:93510-133589154(+), B=419, L=392, M=412, H=512 |  |
| 32319 | tcgaexp | gene=ZNF84, entrez=7637, pos=chr12:42780-133639885(+), B=1626, L=1649, M=1716, H=2045 |  |
| 32319 | tcgaexp | gene=FAM222A, entrez=84915, pos=chr12:110152187-110208312(+), B=241, L=866, M=692, H=594 |  |
| 32319 | tcgaexp | gene=FAM222A-AS1, entrez=84983, pos=chr12:110172014-110211292(-), B=6, L=28, M=27, H=24 |  |