DMR 328 chr1:75598751-75598900 (150bp)
| DMR Stats | |
|---|---|
| Position | chr1:75598751-75598900 (View on UCSC) |
| Width | 150bp |
| Genomic Context | promoter |
| Nearest Genes | LHX8 (0bp away) |
| ANODEV p-value | 0.00696456825723 |
| Frequencies | Benign: 0.0 (0.0%), Low: 0.0 (0.0%), High: 0.0 (0.0 %) |
| Frequent? |
Region Count Boxplot
Region Overview
Gene Overlaps
| Dmrid | Gene Symbol | Gene Id | Isoform Id | Isoform Chr | Isoform Start | Isoform End | Isoform Strand | Overlap Bp | Query Overlap Per | Isoform Overlap Per | Noncoding | Promoter Per | Exonintron Per | End Per |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 328 | LHX8 | 1045 | uc001dgo.3 | chr1 | 75594119 | 75627218 | + | 150 | 100.0 | 0.73 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (100), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0) | 0.0 |
| 328 | LHX8 | 1045 | uc021oou.1 | chr1 | 75595911 | 75609647 | + | 150 | 100.0 | 2.98 | 0 | 0.0 | E1 (0), I1 (100), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0) | 0.0 |
- 2 geness
Feature Overlaps
| Dmrid | Feature Chr | Feature Start | Feature End | Set | Name | Fields |
|---|---|---|---|---|---|---|
| 328 | chr1 | 75598741 | 75599135 | wgEncodeRegDnaseClusteredV2 | 8 | score:193, srow:49591 |
| 328 | chr1 | 75595181 | 75599744 | wgEncodeRegTfbsClusteredV3 | EZH2 | score:546, expCount:9, expNums:6,15,17,19,21,36,38,40,43, expScores:423,261,181,97,372,307,213,278,374, srow:173696 |
| 328 | chr1 | 75597849 | 75598941 | wgEncodeRegTfbsClusteredV3 | SUZ12 | score:192, expCount:1, expNums:578, expScores:141, srow:173702 |
| 328 | chr1 | 75598634 | 75598983 | wgEncodeRegTfbsClusteredV3 | CTCF | score:135, expCount:1, expNums:657, expScores:135, srow:173703 |
| 328 | chr1 | 75598842 | 75598849 | phastConsElements100way | lod=19 | score:285, srow:315988 |
| 328 | chr1 | 75596948 | 75600674 | cpgShore | — | values(x.gr)[overs$srow, ]:2274 |
- 6 featuress
Omics Overlaps
| Dmrid | Omic Set | Data | Plot |
|---|---|---|---|
| 328 | cellmeth_recounts | PrEC: 0, LNCaP: 0, DU145: 0 |  |
| 328 | cellexp | id=ENSG00000162624, name=LHX8, PrEC=0, str=0, LNCaP=0, str=0, DU145=0, str=0 |  |
| 328 | tcgaexp | gene=LHX8, entrez=431707, pos=chr1:75594119-75627218(+), B=2, L=1, M=1, H=1 |  |
| 328 | tcgaexp | gene=LOC100133331, entrez=100133331, pos=chr1:322037-180753553(-), B=268, L=328, M=271, H=305 |  |