DMR 32802 chr14:38680501-38681050 (550bp)
| DMR Stats | |
|---|---|
| Position | chr14:38680501-38681050 (View on UCSC) |
| Width | 550bp |
| Genomic Context | 3' end |
| Nearest Genes | SSTR1 (0bp away) |
| ANODEV p-value | 3.73753592702e-08 |
| Frequencies | Benign: 0.0 (0.0%), Low: 5.0 (83.33%), High: 6.0 (66.67 %) |
| Frequent? |
Region Count Boxplot
Region Overview
Gene Overlaps
| Dmrid | Gene Symbol | Gene Id | Isoform Id | Isoform Chr | Isoform Start | Isoform End | Isoform Strand | Overlap Bp | Query Overlap Per | Isoform Overlap Per | Noncoding | Promoter Per | Exonintron Per | End Per |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 32802 | SSTR1 | 8166 | uc001wul.1 | chr14 | 38677204 | 38682268 | + | 550 | 100.0 | 0.17 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (100) | 0.0 |
- 1 genes
Feature Overlaps
| Dmrid | Feature Chr | Feature Start | Feature End | Set | Name | Fields |
|---|---|---|---|---|---|---|
| 32802 | chr14 | 38680426 | 38681115 | wgEncodeRegDnaseClusteredV2 | 17 | score:256, srow:350805 |
| 32802 | chr14 | 38680310 | 38680813 | wgEncodeRegTfbsClusteredV3 | EZH2 | score:501, expCount:1, expNums:6, expScores:501, srow:1198022 |
| 32802 | chr14 | 38680810 | 38680821 | tfbsConsSites | V$SRY_02 | score:909, zScore:2.2, srow:1530942 |
| 32802 | chr14 | 38681013 | 38681025 | tfbsConsSites | V$HFH3_01 | score:903, zScore:1.85, srow:1530943 |
| 32802 | chr14 | 38681013 | 38681026 | tfbsConsSites | V$POU3F2_01 | score:799, zScore:1.87, srow:1530944 |
| 32802 | chr14 | 38679876 | 38680526 | oreganno | OREG0022666 | id:OREG0022666, srow:6960 |
| 32802 | chr14 | 38680541 | 38680545 | phastConsElements100way | lod=20 | score:290, srow:2651752 |
| 32802 | chr14 | 38680552 | 38680561 | phastConsElements100way | lod=35 | score:345, srow:2651753 |
| 32802 | chr14 | 38680827 | 38680836 | phastConsElements100way | lod=17 | score:274, srow:2651754 |
| 32802 | chr14 | 38680969 | 38681000 | phastConsElements100way | lod=83 | score:431, srow:2651755 |
| 32802 | chr14 | 38681016 | 38681031 | phastConsElements100way | lod=50 | score:381, srow:2651756 |
| 32802 | chr14 | 38678246 | 38680937 | cpgIsland | CpG: 187 | length:2692, cpgNum:187, gcNum:1658, perCpg:13.9, perGc:61.6, obsExp:0.73, srow:6974 |
| 32802 | chr14 | 38680938 | 38682937 | cpgShore | — | values(x.gr)[overs$srow, ]:12778 |
- 13 featuress
Omics Overlaps
| Dmrid | Omic Set | Data | Plot |
|---|---|---|---|
| 32802 | cellmeth_recounts | PrEC: 1, LNCaP: 49, DU145: 12 |  |
| 32802 | cellmeth_diffreps_PrECvsLNCaP | A=0, B=65, Length=920, Event=Up, log2FC=Inf, padj=0 |  |
| 32802 | cellmeth_diffreps_LNCaPvsDU145 | A=32.07, B=6.55, Length=280, Event=Down, log2FC=-2.29, padj=0.00238793310561776 |  |
| 32802 | cellexp | id=ENSG00000139874, name=SSTR1, PrEC=0, str=2, LNCaP=4, str=1, DU145=0, str=0 |  |
| 32802 | tcgameth | site:cg16190266, B=0.32, L=0.58, H=0.56 |  |
| 32802 | tcgaexp | gene=SSTR1, entrez=6751, pos=chr14:38677204-38682268(+), B=300, L=710, M=910, H=3003 |  |