DMR 33860 chr17:182751-182900 (150bp)
| DMR Stats | |
|---|---|
| Position | chr17:182751-182900 (View on UCSC) |
| Width | 150bp |
| Genomic Context | 3' end |
| Nearest Genes | RPH3AL, LOC100506388 (0bp away) |
| ANODEV p-value | 0.00229924389046 |
| Frequencies | Benign: 4.0 (57.14%), Low: 6.0 (100.0%), High: 9.0 (100.0 %) |
| Frequent? |
Region Count Boxplot
Region Overview
Gene Overlaps
| Dmrid | Gene Symbol | Gene Id | Isoform Id | Isoform Chr | Isoform Start | Isoform End | Isoform Strand | Overlap Bp | Query Overlap Per | Isoform Overlap Per | Noncoding | Promoter Per | Exonintron Per | End Per |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 33860 | RPH3AL | 11877 | uc002fre.2 | chr17 | 62180 | 202633 | - | 150 | 100.0 | 0.04 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (100), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0) | 0.0 |
| 33860 | RPH3AL | 11877 | uc002frf.2 | chr17 | 62180 | 202633 | - | 150 | 100.0 | 0.04 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (100), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0) | 0.0 |
| 33860 | RPH3AL | 11877 | uc010cjl.2 | chr17 | 62180 | 202633 | - | 150 | 100.0 | 0.06 | 0 | 0.0 | E1 (0), I1 (100), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0) | 0.0 |
| 33860 | RPH3AL | 11877 | uc021tmx.1 | chr17 | 62180 | 202633 | - | 150 | 100.0 | 0.04 | 0 | 0.0 | E1 (0), I1 (100), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0) | 0.0 |
| 33860 | LOC100506388 | 11878 | uc021tmy.1 | chr17 | 180996 | 183279 | + | 150 | 100.0 | 0.04 | 1 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (64), E3 (36) | 100.0 |
| 33860 | LOC100506388 | 11878 | uc021tmz.1 | chr17 | 180996 | 183279 | + | 150 | 100.0 | 0.06 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (64), E3 (36) | 100.0 |
- 6 geness
Feature Overlaps
| Dmrid | Feature Chr | Feature Start | Feature End | Set | Name | Fields |
|---|---|---|---|---|---|---|
| 33860 | chr17 | 182246 | 183095 | wgEncodeRegDnaseClusteredV2 | 56 | score:1000, srow:471093 |
| 33860 | chr17 | 182449 | 182752 | wgEncodeRegTfbsClusteredV3 | FOXP2 | score:131, expCount:1, expNums:251, expScores:131, srow:1606316 |
| 33860 | chr17 | 182801 | 183116 | wgEncodeRegTfbsClusteredV3 | YY1 | score:202, expCount:1, expNums:245, expScores:202, srow:1606317 |
| 33860 | chr17 | 181076 | 183075 | cpgShelf | — | values(x.gr)[overs$srow, ]:15394 |
- 4 featuress
Omics Overlaps
| Dmrid | Omic Set | Data | Plot |
|---|---|---|---|
| 33860 | cellmeth_recounts | PrEC: 16, LNCaP: 1, DU145: 0 |  |
| 33860 | cellmeth_diffreps_PrECvsLNCaP | A=57, B=3, Length=420, Event=Down, log2FC=-4.25, padj=1.41030824422792e-12 |  |
| 33860 | cellmeth_diffreps_PrECvsDU145 | A=57, B=1, Length=440, Event=Down, log2FC=-5.83, padj=0 |  |
| 33860 | cellexp | id=ENSG00000181031, name=RPH3AL, PrEC=139, str=116, LNCaP=825, str=593, DU145=1180, str=616 |  |
| 33860 | cellexp | id=ENSG00000262061, name=RP11-1260E13.4, PrEC=2, str=0, LNCaP=2, str=3, DU145=3, str=2 |  |
| 33860 | tcgaexp | gene=RPH3AL, entrez=9501, pos=chr17:62180-202633(-), B=579, L=622, M=682, H=475 |  |
| 33860 | tcgaexp | gene=PLEKHM1, entrez=9842, pos=chr17:128328-43568146(-), B=1993, L=1631, M=1589, H=1418 |  |
| 33860 | tcgaexp | gene=ARHGAP27, entrez=201176, pos=chr17:86404-43511112(-), B=1570, L=1264, M=1273, H=1486 |  |