DMR 33861 chr17:185951-186150 (200bp)

DMR Stats
Positionchr17:185951-186150 (View on UCSC)
Width200bp
Genomic Contextintron
Nearest GenesRPH3AL (0bp away)
ANODEV p-value0.0121573016647
FrequenciesBenign: 2.0 (28.57%), Low: 4.0 (66.67%), High: 8.0 (88.89 %)
Frequent?

Region Count Boxplot

Region Overview

Gene Overlaps

Dmrid Gene Symbol Gene Id Isoform Id Isoform Chr Isoform Start Isoform End Isoform Strand Overlap Bp Query Overlap Per Isoform Overlap Per Noncoding Promoter Per Exonintron Per End Per
33861 RPH3AL 11877 uc002fre.2 chr17 62180 202633 - 200 100.0 0.04 0 0.0 E1 (0), I1 (100), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0) 0.0
33861 RPH3AL 11877 uc002frf.2 chr17 62180 202633 - 200 100.0 0.04 0 0.0 E1 (0), I1 (100), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0) 0.0
33861 RPH3AL 11877 uc010cjl.2 chr17 62180 202633 - 200 100.0 0.04 0 0.0 E1 (0), I1 (100), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0) 0.0
33861 RPH3AL 11877 uc021tmx.1 chr17 62180 202633 - 200 100.0 0.06 0 0.0 E1 (0), I1 (100), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0) 0.0
  • 4 geness

Feature Overlaps

Dmrid Feature Chr Feature Start Feature End Set Name Fields
33861 chr17 185921 186735 wgEncodeRegDnaseClusteredV2 55 score:979, srow:471098
33861 chr17 186011 186611 wgEncodeRegTfbsClusteredV3 ZNF263 score:1000, expCount:1, expNums:368, expScores:515, srow:1606323
33861 chr17 185977 185996 tfbsConsSites V$YY1_02 score:780, zScore:1.96, srow:2056669
33861 chr17 185978 185991 tfbsConsSites V$ATF_01 score:830, zScore:1.8, srow:2056670
33861 chr17 185979 185994 tfbsConsSites V$TAL1BETAE47_01 score:850, zScore:1.9, srow:2056671
33861 chr17 185979 185994 tfbsConsSites V$TAL1BETAITF2_01 score:852, zScore:1.83, srow:2056672
33861 chr17 186026 186038 tfbsConsSites V$GATA1_04 score:898, zScore:2.04, srow:2056673
33861 chr17 186028 186036 tfbsConsSites V$GATA3_01 score:940, zScore:2, srow:2056674
33861 chr17 186028 186036 tfbsConsSites V$LMO2COM_02 score:938, zScore:2.48, srow:2056675
33861 chr17 186029 186039 tfbsConsSites V$EVI1_03 score:828, zScore:2.05, srow:2056676
33861 chr17 186030 186041 tfbsConsSites V$AREB6_02 score:895, zScore:1.65, srow:2056677
33861 chr17 186060 186069 tfbsConsSites V$MYOD_Q6 score:988, zScore:2.1, srow:2056678
33861 chr17 186062 186073 tfbsConsSites V$MEIS1_01 score:918, zScore:2.04, srow:2056679
33861 chr17 186066 186083 tfbsConsSites V$AHR_01 score:783, zScore:1.99, srow:2056680
33861 chr17 185944 186023 phastConsElements100way lod=200 score:518, srow:3518415
33861 chr17 186029 186046 phastConsElements100way lod=47 score:375, srow:3518416
33861 chr17 186062 186070 phastConsElements100way lod=27 score:320, srow:3518417
33861 chr17 186082 186086 phastConsElements100way lod=20 score:290, srow:3518418
33861 chr17 186096 186103 phastConsElements100way lod=13 score:247, srow:3518419
33861 chr17 186106 186121 phastConsElements100way lod=14 score:255, srow:3518420
33861 chr17 185297 187296 cpgShore — values(x.gr)[overs$srow, ]:18037
  • 21 featuress

Omics Overlaps

Dmrid Omic Set Data Plot
33861 cellmeth_recounts PrEC: 0, LNCaP: 8, DU145: 9
33861 cellexp id=ENSG00000181031, name=RPH3AL, PrEC=139, str=116, LNCaP=825, str=593, DU145=1180, str=616
33861 tcgaexp gene=RPH3AL, entrez=9501, pos=chr17:62180-202633(-), B=579, L=622, M=682, H=475
33861 tcgaexp gene=PLEKHM1, entrez=9842, pos=chr17:128328-43568146(-), B=1993, L=1631, M=1589, H=1418
33861 tcgaexp gene=ARHGAP27, entrez=201176, pos=chr17:86404-43511112(-), B=1570, L=1264, M=1273, H=1486