DMR 33862 chr17:205051-205550 (500bp)

DMR Stats
Positionchr17:205051-205550 (View on UCSC)
Width500bp
Genomic Contextintergenic
Nearest GenesRPH3AL (2417bp away)
ANODEV p-value0.00937731596446
FrequenciesBenign: 1.0 (14.29%), Low: 3.0 (50.0%), High: 4.0 (44.44 %)
Frequent?

Region Count Boxplot

Region Overview

Gene Overlaps

Dmrid Gene Symbol Gene Id Isoform Id Isoform Chr Isoform Start Isoform End Isoform Strand Overlap Bp Query Overlap Per Isoform Overlap Per Noncoding Promoter Per Exonintron Per End Per

Feature Overlaps

Dmrid Feature Chr Feature Start Feature End Set Name Fields
33862 chr17 204921 205250 wgEncodeRegDnaseClusteredV2 20 score:1000, srow:471118
33862 chr17 204892 205275 wgEncodeRegTfbsClusteredV3 USF1 score:951, expCount:5, expNums:67,68,69,161,202, expScores:427,345,477,314,951, srow:1606428
33862 chr17 204927 205262 wgEncodeRegTfbsClusteredV3 MAX score:149, expCount:1, expNums:439, expScores:149, srow:1606429
33862 chr17 204927 205190 wgEncodeRegTfbsClusteredV3 USF2 score:265, expCount:1, expNums:455, expScores:265, srow:1606430
33862 chr17 204968 205397 wgEncodeRegTfbsClusteredV3 POLR2A score:282, expCount:1, expNums:61, expScores:282, srow:1606431
33862 chr17 205294 205314 tfbsConsSites V$PAX6_01 score:802, zScore:2.67, srow:2056707
33862 chr17 205468 205674 phastConsElements100way lod=69 score:413, srow:3518471
33862 chr17 205476 206667 cpgIsland CpG: 109 length:1192, cpgNum:109, gcNum:687, perCpg:18.3, perGc:57.6, obsExp:1.21, srow:9884
33862 chr17 203476 205475 cpgShore — values(x.gr)[overs$srow, ]:18038
  • 9 featuress

Omics Overlaps

Dmrid Omic Set Data Plot
33862 cellmeth_recounts PrEC: 7, LNCaP: 20, DU145: 6
33862 cellmeth_diffreps_LNCaPvsDU145 A=18.17, B=0, Length=300, Event=Down, log2FC=-Inf, padj=0.000108654406944951
33862 cellexp id=ENSG00000181031, name=RPH3AL, PrEC=139, str=116, LNCaP=825, str=593, DU145=1180, str=616
33862 cellexp id=ENSG00000262294, name=RP11-1260E13.2, PrEC=0, str=0, LNCaP=5, str=9, DU145=8, str=4
33862 cellexp id=ENSG00000262558, name=RP11-1260E13.3, PrEC=0, str=0, LNCaP=8, str=10, DU145=12, str=6
33862 tcgaexp gene=PLEKHM1, entrez=9842, pos=chr17:128328-43568146(-), B=1993, L=1631, M=1589, H=1418
33862 tcgaexp gene=ARL17A, entrez=51326, pos=chr17:195721-44657088(-), B=200, L=195, M=210, H=230
33862 tcgaexp gene=LRRC37A4P, entrez=55073, pos=chr17:197706-43597889(-), B=1015, L=1512, M=1396, H=1450
33862 tcgaexp gene=ARHGAP27, entrez=201176, pos=chr17:86404-43511112(-), B=1570, L=1264, M=1273, H=1486
33862 tcgaexp gene=LRRC37A2, entrez=474170, pos=chr17:197706-44633014(+), B=351, L=310, M=361, H=377