DMR 33873 chr17:738751-738950 (200bp)
| DMR Stats | |
|---|---|
| Position | chr17:738751-738950 (View on UCSC) |
| Width | 200bp |
| Genomic Context | intron |
| Nearest Genes | NXN (0bp away) |
| ANODEV p-value | 0.00183693651562 |
| Frequencies | Benign: 2.0 (28.57%), Low: 4.0 (66.67%), High: 9.0 (100.0 %) |
| Frequent? |
Region Count Boxplot
Region Overview
Gene Overlaps
| Dmrid | Gene Symbol | Gene Id | Isoform Id | Isoform Chr | Isoform Start | Isoform End | Isoform Strand | Overlap Bp | Query Overlap Per | Isoform Overlap Per | Noncoding | Promoter Per | Exonintron Per | End Per |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 33873 | NXN | 11889 | uc002fsa.3 | chr17 | 702553 | 882998 | - | 200 | 100.0 | 0.04 | 0 | 0.0 | E1 (0), I1 (100), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0) | 0.0 |
| 33873 | NXN | 11890 | uc002fsb.2 | chr17 | 722368 | 800254 | - | 200 | 100.0 | 0.05 | 0 | 0.0 | E1 (0), I1 (100), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0) | 0.0 |
| 33873 | NXN | 11889 | uc010vqe.2 | chr17 | 702553 | 767351 | - | 200 | 100.0 | 0.04 | 0 | 0.0 | E1 (0), I1 (100), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0) | 0.0 |
- 3 geness
Feature Overlaps
| Dmrid | Feature Chr | Feature Start | Feature End | Set | Name | Fields |
|---|---|---|---|---|---|---|
| 33873 | chr17 | 738581 | 738915 | wgEncodeRegDnaseClusteredV2 | 75 | score:1000, srow:471461 |
| 33873 | chr17 | 738561 | 739004 | wgEncodeRegTfbsClusteredV3 | POLR2A | score:259, expCount:1, expNums:259, expScores:259, srow:1607224 |
| 33873 | chr17 | 738696 | 738945 | wgEncodeRegTfbsClusteredV3 | TEAD4 | score:522, expCount:1, expNums:160, expScores:522, srow:1607225 |
| 33873 | chr17 | 738753 | 738772 | phastConsElements100way | lod=43 | score:366, srow:3520570 |
| 33873 | chr17 | 738787 | 738795 | phastConsElements100way | lod=21 | score:295, srow:3520571 |
| 33873 | chr17 | 738804 | 738810 | phastConsElements100way | lod=22 | score:300, srow:3520572 |
| 33873 | chr17 | 738814 | 738821 | phastConsElements100way | lod=26 | score:316, srow:3520573 |
| 33873 | chr17 | 738843 | 738847 | phastConsElements100way | lod=16 | score:268, srow:3520574 |
| 33873 | chr17 | 738876 | 738877 | phastConsElements100way | lod=12 | score:240, srow:3520575 |
| 33873 | chr17 | 738869 | 739377 | cpgIsland | CpG: 36 | length:509, cpgNum:36, gcNum:305, perCpg:14.1, perGc:59.9, obsExp:0.79, srow:9899 |
| 33873 | chr17 | 736869 | 738868 | cpgShore | — | values(x.gr)[overs$srow, ]:18064 |
- 11 featuress
Omics Overlaps
| Dmrid | Omic Set | Data | Plot |
|---|---|---|---|
| 33873 | cellmeth_recounts | PrEC: 6, LNCaP: 6, DU145: 0 |  |
| 33873 | cellexp | id=ENSG00000167693, name=NXN, PrEC=14170, str=7994, LNCaP=1525, str=1905, DU145=11809, str=9379 |  |
| 33873 | tcgaexp | gene=NSF, entrez=4905, pos=chr17:266212-44834828(+), B=3355, L=5678, M=5410, H=5700 |  |
| 33873 | tcgaexp | gene=PLEKHM1, entrez=9842, pos=chr17:128328-43568146(-), B=1993, L=1631, M=1589, H=1418 |  |
| 33873 | tcgaexp | gene=LRRC37A, entrez=9884, pos=chr17:415627-44415160(+), B=924, L=896, M=971, H=940 |  |
| 33873 | tcgaexp | gene=ARL17A, entrez=51326, pos=chr17:195721-44657088(-), B=200, L=195, M=210, H=230 |  |
| 33873 | tcgaexp | gene=LRRC37A4P, entrez=55073, pos=chr17:197706-43597889(-), B=1015, L=1512, M=1396, H=1450 |  |
| 33873 | tcgaexp | gene=NXN, entrez=64359, pos=chr17:702553-882998(-), B=5704, L=5393, M=4923, H=3951 |  |
| 33873 | tcgaexp | gene=ARHGAP27, entrez=201176, pos=chr17:86404-43511112(-), B=1570, L=1264, M=1273, H=1486 |  |
| 33873 | tcgaexp | gene=KANSL1, entrez=284058, pos=chr17:563498-44302740(-), B=3141, L=2594, M=2797, H=3017 |  |
| 33873 | tcgaexp | gene=LRRC37A2, entrez=474170, pos=chr17:197706-44633014(+), B=351, L=310, M=361, H=377 |  |