DMR 33892 chr17:873301-873550 (250bp)

DMR Stats
Positionchr17:873301-873550 (View on UCSC)
Width250bp
Genomic Contextintron
Nearest GenesNXN (0bp away)
ANODEV p-value7.51030379898e-05
FrequenciesBenign: 1.0 (14.29%), Low: 6.0 (100.0%), High: 9.0 (100.0 %)
Frequent?

Region Count Boxplot

Region Overview

Gene Overlaps

Dmrid Gene Symbol Gene Id Isoform Id Isoform Chr Isoform Start Isoform End Isoform Strand Overlap Bp Query Overlap Per Isoform Overlap Per Noncoding Promoter Per Exonintron Per End Per
33892 NXN 11889 uc002fsa.3 chr17 702553 882998 - 250 100.0 0.04 0 0.0 E1 (0), I1 (100), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0) 0.0
  • 1 genes

Feature Overlaps

Dmrid Feature Chr Feature Start Feature End Set Name Fields
33892 chr17 872741 873875 wgEncodeRegDnaseClusteredV2 57 score:1000, srow:471607
33892 chr17 873311 873315 phastConsElements100way lod=15 score:262, srow:3521131
33892 chr17 873329 873354 phastConsElements100way lod=55 score:390, srow:3521132
33892 chr17 873360 873439 phastConsElements100way lod=212 score:524, srow:3521133
33892 chr17 873442 873596 phastConsElements100way lod=591 score:625, srow:3521134
  • 5 featuress

Omics Overlaps

Dmrid Omic Set Data Plot
33892 cellmeth_recounts PrEC: 1, LNCaP: 13, DU145: 13
33892 cellexp id=ENSG00000167693, name=NXN, PrEC=14170, str=7994, LNCaP=1525, str=1905, DU145=11809, str=9379
33892 tcgameth site:cg09780231, B=0.21, L=0.65, H=0.57
33892 tcgameth site:cg25293325, B=0.33, L=0.68, H=0.64
33892 tcgaexp gene=MAPT, entrez=4137, pos=chr17:762281-44105699(+), B=1933, L=2382, M=2487, H=2583
33892 tcgaexp gene=NSF, entrez=4905, pos=chr17:266212-44834828(+), B=3355, L=5678, M=5410, H=5700
33892 tcgaexp gene=PLEKHM1, entrez=9842, pos=chr17:128328-43568146(-), B=1993, L=1631, M=1589, H=1418
33892 tcgaexp gene=LRRC37A, entrez=9884, pos=chr17:415627-44415160(+), B=924, L=896, M=971, H=940
33892 tcgaexp gene=ARL17A, entrez=51326, pos=chr17:195721-44657088(-), B=200, L=195, M=210, H=230
33892 tcgaexp gene=LRRC37A4P, entrez=55073, pos=chr17:197706-43597889(-), B=1015, L=1512, M=1396, H=1450
33892 tcgaexp gene=NXN, entrez=64359, pos=chr17:702553-882998(-), B=5704, L=5393, M=4923, H=3951
33892 tcgaexp gene=ARHGAP27, entrez=201176, pos=chr17:86404-43511112(-), B=1570, L=1264, M=1273, H=1486
33892 tcgaexp gene=STH, entrez=246744, pos=chr17:790689-44077060(+), B=0, L=0, M=0, H=0
33892 tcgaexp gene=KANSL1, entrez=284058, pos=chr17:563498-44302740(-), B=3141, L=2594, M=2797, H=3017
33892 tcgaexp gene=LRRC37A2, entrez=474170, pos=chr17:197706-44633014(+), B=351, L=310, M=361, H=377