DMR 33913 chr17:1864051-1864750 (700bp)
| DMR Stats | |
|---|---|
| Position | chr17:1864051-1864750 (View on UCSC) |
| Width | 700bp |
| Genomic Context | intron |
| Nearest Genes | RTN4RL1 (0bp away) |
| ANODEV p-value | 1.20534746205e-09 |
| Frequencies | Benign: 0.0 (0.0%), Low: 4.0 (66.67%), High: 6.0 (66.67 %) |
| Frequent? |
Region Count Boxplot
Region Overview
Gene Overlaps
| Dmrid | Gene Symbol | Gene Id | Isoform Id | Isoform Chr | Isoform Start | Isoform End | Isoform Strand | Overlap Bp | Query Overlap Per | Isoform Overlap Per | Noncoding | Promoter Per | Exonintron Per | End Per |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 33913 | RTN4RL1 | 11914 | uc002ftp.3 | chr17 | 1837971 | 1928178 | - | 700 | 100.0 | 0.38 | 0 | 0.0 | E1 (0), I1 (100), E2 (0) | 0.0 |
- 1 genes
Feature Overlaps
| Dmrid | Feature Chr | Feature Start | Feature End | Set | Name | Fields |
|---|---|---|---|---|---|---|
| 33913 | chr17 | 1864426 | 1864575 | wgEncodeRegDnaseClusteredV2 | 3 | score:242, srow:472497 |
| 33913 | chr17 | 1864586 | 1864835 | wgEncodeRegDnaseClusteredV2 | 9 | score:1000, srow:472498 |
| 33913 | chr17 | 1864392 | 1865101 | wgEncodeRegTfbsClusteredV3 | SETDB1 | score:269, expCount:1, expNums:589, expScores:269, srow:1611247 |
| 33913 | chr17 | 1864452 | 1864881 | wgEncodeRegTfbsClusteredV3 | E2F6 | score:171, expCount:2, expNums:215,495, expScores:171,151, srow:1611248 |
| 33913 | chr17 | 1864474 | 1864867 | wgEncodeRegTfbsClusteredV3 | MAX | score:243, expCount:3, expNums:223,352,511, expScores:214,243,223, srow:1611249 |
| 33913 | chr17 | 1864523 | 1864772 | wgEncodeRegTfbsClusteredV3 | TEAD4 | score:251, expCount:1, expNums:160, expScores:251, srow:1611250 |
| 33913 | chr17 | 1864532 | 1864841 | wgEncodeRegTfbsClusteredV3 | BHLHE40 | score:238, expCount:1, expNums:472, expScores:238, srow:1611251 |
| 33913 | chr17 | 1864567 | 1864849 | wgEncodeRegTfbsClusteredV3 | USF2 | score:914, expCount:2, expNums:360,455, expScores:914,316, srow:1611252 |
| 33913 | chr17 | 1864599 | 1864839 | wgEncodeRegTfbsClusteredV3 | USF1 | score:1000, expCount:3, expNums:161,202,243, expScores:1000,784,385, srow:1611253 |
| 33913 | chr17 | 1864416 | 1864427 | tfbsConsSites | V$CDP_01 | score:839, zScore:2.9, srow:2061468 |
| 33913 | chr17 | 1864034 | 1864052 | phastConsElements100way | lod=24 | score:308, srow:3527539 |
| 33913 | chr17 | 1864153 | 1864160 | phastConsElements100way | lod=22 | score:300, srow:3527540 |
| 33913 | chr17 | 1864322 | 1864334 | phastConsElements100way | lod=34 | score:343, srow:3527541 |
| 33913 | chr17 | 1864706 | 1864709 | phastConsElements100way | lod=13 | score:247, srow:3527542 |
- 14 featuress
Omics Overlaps
| Dmrid | Omic Set | Data | Plot |
|---|---|---|---|
| 33913 | cellmeth_recounts | PrEC: 54, LNCaP: 10, DU145: 13 |  |
| 33913 | cellmeth_diffreps_PrECvsLNCaP | A=81, B=6, Length=420, Event=Down, log2FC=-3.75, padj=0 |  |
| 33913 | cellmeth_diffreps_PrECvsDU145 | A=81, B=6, Length=400, Event=Down, log2FC=-3.75, padj=0 |  |
| 33913 | cellexp | id=ENSG00000185924, name=RTN4RL1, PrEC=45, str=36, LNCaP=459, str=430, DU145=7, str=0 |  |
| 33913 | tcgaexp | gene=CRHR1, entrez=1394, pos=chr17:954315-43913194(+), B=36, L=21, M=25, H=18 |  |
| 33913 | tcgaexp | gene=MAPT, entrez=4137, pos=chr17:762281-44105699(+), B=1933, L=2382, M=2487, H=2583 |  |
| 33913 | tcgaexp | gene=NSF, entrez=4905, pos=chr17:266212-44834828(+), B=3355, L=5678, M=5410, H=5700 |  |
| 33913 | tcgaexp | gene=PLEKHM1, entrez=9842, pos=chr17:128328-43568146(-), B=1993, L=1631, M=1589, H=1418 |  |
| 33913 | tcgaexp | gene=LRRC37A, entrez=9884, pos=chr17:415627-44415160(+), B=924, L=896, M=971, H=940 |  |
| 33913 | tcgaexp | gene=ARL17A, entrez=51326, pos=chr17:195721-44657088(-), B=200, L=195, M=210, H=230 |  |
| 33913 | tcgaexp | gene=LRRC37A4P, entrez=55073, pos=chr17:197706-43597889(-), B=1015, L=1512, M=1396, H=1450 |  |
| 33913 | tcgaexp | gene=RTN4RL1, entrez=146760, pos=chr17:1837971-1928178(-), B=875, L=721, M=801, H=771 |  |
| 33913 | tcgaexp | gene=CRHR1-IT1, entrez=147081, pos=chr17:1143726-43723595(+), B=197, L=211, M=215, H=223 |  |
| 33913 | tcgaexp | gene=SPPL2C, entrez=162540, pos=chr17:943102-43924438(+), B=0, L=0, M=0, H=0 |  |
| 33913 | tcgaexp | gene=ARHGAP27, entrez=201176, pos=chr17:86404-43511112(-), B=1570, L=1264, M=1273, H=1486 |  |
| 33913 | tcgaexp | gene=STH, entrez=246744, pos=chr17:790689-44077060(+), B=0, L=0, M=0, H=0 |  |
| 33913 | tcgaexp | gene=KANSL1, entrez=284058, pos=chr17:563498-44302740(-), B=3141, L=2594, M=2797, H=3017 |  |
| 33913 | tcgaexp | gene=MGC57346, entrez=401884, pos=chr17:1151952-43715329(+), B=601, L=581, M=566, H=598 |  |
| 33913 | tcgaexp | gene=LRRC37A2, entrez=474170, pos=chr17:197706-44633014(+), B=351, L=310, M=361, H=377 |  |
| 33913 | tcgaexp | gene=LOC644172, entrez=644172, pos=chr17:1188439-43679748(-), B=84, L=82, M=93, H=90 |  |
| 33913 | tcgaexp | gene=MAPT-AS1, entrez=100128977, pos=chr17:894694-43972879(-), B=1, L=2, M=4, H=2 |  |
| 33913 | tcgaexp | gene=MAPT-IT1, entrez=100130148, pos=chr17:891434-43976164(+), B=5, L=3, M=3, H=4 |  |