DMR 34 chr1:3134701-3134850 (150bp)
| DMR Stats | |
|---|---|
| Position | chr1:3134701-3134850 (View on UCSC) |
| Width | 150bp |
| Genomic Context | intron |
| Nearest Genes | PRDM16 (0bp away) |
| ANODEV p-value | 0.00352386375899 |
| Frequencies | Benign: 0.0 (0.0%), Low: 3.0 (50.0%), High: 1.0 (11.11 %) |
| Frequent? |
Region Count Boxplot
Region Overview
Gene Overlaps
| Dmrid | Gene Symbol | Gene Id | Isoform Id | Isoform Chr | Isoform Start | Isoform End | Isoform Strand | Overlap Bp | Query Overlap Per | Isoform Overlap Per | Noncoding | Promoter Per | Exonintron Per | End Per |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 34 | PRDM16 | 117 | uc001akc.3 | chr1 | 2985742 | 3355185 | + | 150 | 100.0 | 1.25 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (100), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0), I11 (0), E12 (0), I12 (0), E13 (0), I13 (0), E14 (0), I14 (0), E15 (0), I15 (0), E16 (0), I16 (0), E17 (0) | 0.0 |
| 34 | PRDM16 | 117 | uc001ake.3 | chr1 | 2985742 | 3355185 | + | 150 | 100.0 | 0.75 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (100), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0), I11 (0), E12 (0), I12 (0), E13 (0), I13 (0), E14 (0), I14 (0), E15 (0), I15 (0), E16 (0), I16 (0), E17 (0) | 0.0 |
| 34 | PRDM16 | 117 | uc001akf.3 | chr1 | 2985742 | 3355185 | + | 150 | 100.0 | 1.25 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (100), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0), I11 (0), E12 (0), I12 (0), E13 (0), I13 (0), E14 (0), I14 (0), E15 (0), I15 (0), E16 (0), I16 (0), E17 (0) | 0.0 |
| 34 | PRDM16 | 117 | uc009vlh.3 | chr1 | 2985742 | 3355185 | + | 150 | 100.0 | 1.29 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (100), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0), I11 (0), E12 (0), I12 (0), E13 (0), I13 (0), E14 (0), I14 (0), E15 (0), I15 (0), E16 (0), I16 (0), E17 (0) | 0.0 |
- 4 geness
Feature Overlaps
| Dmrid | Feature Chr | Feature Start | Feature End | Set | Name | Fields |
|---|---|---|---|---|---|---|
| 34 | chr1 | 3134686 | 3135075 | wgEncodeRegDnaseClusteredV2 | 4 | score:301, srow:2319 |
| 34 | chr1 | 3134825 | 3134842 | tfbsConsSites | V$IRF7_01 | score:856, zScore:2.82, srow:6080 |
| 34 | chr1 | 3134831 | 3134849 | tfbsConsSites | V$OCT1_01 | score:823, zScore:2.35, srow:6081 |
| 34 | chr1 | 3134836 | 3134845 | tfbsConsSites | V$POU3F2_02 | score:912, zScore:2.71, srow:6082 |
| 34 | chr1 | 3134694 | 3134724 | phastConsElements100way | lod=141 | score:483, srow:13420 |
| 34 | chr1 | 3134729 | 3134743 | phastConsElements100way | lod=48 | score:377, srow:13421 |
| 34 | chr1 | 3134750 | 3134756 | phastConsElements100way | lod=51 | score:383, srow:13422 |
| 34 | chr1 | 3134764 | 3134826 | phastConsElements100way | lod=387 | score:583, srow:13423 |
| 34 | chr1 | 3134829 | 3134907 | phastConsElements100way | lod=785 | score:653, srow:13424 |
- 9 featuress
Omics Overlaps
| Dmrid | Omic Set | Data | Plot |
|---|---|---|---|
| 34 | cellmeth_recounts | PrEC: 1, LNCaP: 4, DU145: 3 |  |
| 34 | cellexp | id=ENSG00000142611, name=PRDM16, PrEC=8, str=18, LNCaP=18, str=10, DU145=49, str=42 |  |
| 34 | tcgameth | site:cg10493186, B=0.61, L=0.7, H=0.66 |  |
| 34 | tcgaexp | gene=SRSF10, entrez=10772, pos=chr1:36273-24306953(-), B=3487, L=3388, M=3432, H=4019 |  |
| 34 | tcgaexp | gene=PRDM16, entrez=63976, pos=chr1:2985742-3355185(+), B=306, L=40, M=53, H=56 |  |
| 34 | tcgaexp | gene=LOC100133331, entrez=100133331, pos=chr1:322037-180753553(-), B=268, L=328, M=271, H=305 |  |