DMR 34219 chr17:42835751-42836000 (250bp)

DMR Stats
Positionchr17:42835751-42836000 (View on UCSC)
Width250bp
Genomic Contextpromoter
Nearest GenesADAM11 (567bp away)
ANODEV p-value0.000505516091291
FrequenciesBenign: 0.0 (0.0%), Low: 4.0 (66.67%), High: 6.0 (66.67 %)
Frequent?

Region Count Boxplot

Region Overview

Gene Overlaps

Dmrid Gene Symbol Gene Id Isoform Id Isoform Chr Isoform Start Isoform End Isoform Strand Overlap Bp Query Overlap Per Isoform Overlap Per Noncoding Promoter Per Exonintron Per End Per

Feature Overlaps

Dmrid Feature Chr Feature Start Feature End Set Name Fields
34219 chr17 42834926 42837395 wgEncodeRegDnaseClusteredV2 64 score:1000, srow:497253
34219 chr17 42835485 42836268 wgEncodeRegTfbsClusteredV3 EZH2 score:297, expCount:1, expNums:36, expScores:297, srow:1707682
34219 chr17 42835777 42836242 cpgIsland CpG: 44 length:466, cpgNum:44, gcNum:326, perCpg:18.9, perGc:70, obsExp:0.77, srow:10695
34219 chr17 42833777 42835776 cpgShore — values(x.gr)[overs$srow, ]:19515
  • 4 featuress

Omics Overlaps

Dmrid Omic Set Data Plot
34219 cellmeth_recounts PrEC: 10, LNCaP: 467, DU145: 8
34219 cellmeth_diffreps_PrECvsLNCaP A=15, B=398, Length=800, Event=Up, log2FC=4.73, padj=0
34219 cellmeth_diffreps_LNCaPvsDU145 A=424.41, B=9.35, Length=760, Event=Down, log2FC=-5.5, padj=0
34219 tcgameth site:cg25558103, B=0.3, L=0.66, H=0.67
34219 tcgaexp gene=CRHR1, entrez=1394, pos=chr17:954315-43913194(+), B=36, L=21, M=25, H=18
34219 tcgaexp gene=MAPT, entrez=4137, pos=chr17:762281-44105699(+), B=1933, L=2382, M=2487, H=2583
34219 tcgaexp gene=NSF, entrez=4905, pos=chr17:266212-44834828(+), B=3355, L=5678, M=5410, H=5700
34219 tcgaexp gene=PLEKHM1, entrez=9842, pos=chr17:128328-43568146(-), B=1993, L=1631, M=1589, H=1418
34219 tcgaexp gene=LRRC37A, entrez=9884, pos=chr17:415627-44415160(+), B=924, L=896, M=971, H=940
34219 tcgaexp gene=ARL17A, entrez=51326, pos=chr17:195721-44657088(-), B=200, L=195, M=210, H=230
34219 tcgaexp gene=LRRC37A4P, entrez=55073, pos=chr17:197706-43597889(-), B=1015, L=1512, M=1396, H=1450
34219 tcgaexp gene=CRHR1-IT1, entrez=147081, pos=chr17:1143726-43723595(+), B=197, L=211, M=215, H=223
34219 tcgaexp gene=SPPL2C, entrez=162540, pos=chr17:943102-43924438(+), B=0, L=0, M=0, H=0
34219 tcgaexp gene=ARHGAP27, entrez=201176, pos=chr17:86404-43511112(-), B=1570, L=1264, M=1273, H=1486
34219 tcgaexp gene=STH, entrez=246744, pos=chr17:790689-44077060(+), B=0, L=0, M=0, H=0
34219 tcgaexp gene=KANSL1, entrez=284058, pos=chr17:563498-44302740(-), B=3141, L=2594, M=2797, H=3017
34219 tcgaexp gene=MGC57346, entrez=401884, pos=chr17:1151952-43715329(+), B=601, L=581, M=566, H=598
34219 tcgaexp gene=LRRC37A2, entrez=474170, pos=chr17:197706-44633014(+), B=351, L=310, M=361, H=377
34219 tcgaexp gene=LOC644172, entrez=644172, pos=chr17:1188439-43679748(-), B=84, L=82, M=93, H=90
34219 tcgaexp gene=MAPT-AS1, entrez=100128977, pos=chr17:894694-43972879(-), B=1, L=2, M=4, H=2
34219 tcgaexp gene=MAPT-IT1, entrez=100130148, pos=chr17:891434-43976164(+), B=5, L=3, M=3, H=4