DMR 34290 chr17:48545751-48546900 (1150bp)
| DMR Stats | |
|---|---|
| Position | chr17:48545751-48546900 (View on UCSC) |
| Width | 1150bp |
| Genomic Context | promoter |
| Nearest Genes | ACSF2, CHAD (0bp away) |
| ANODEV p-value | 8.69642099924e-05 |
| Frequencies | Benign: 0.0 (0.0%), Low: 6.0 (100.0%), High: 9.0 (100.0 %) |
| Frequent? |
Region Count Boxplot
Region Overview
Gene Overlaps
| Dmrid | Gene Symbol | Gene Id | Isoform Id | Isoform Chr | Isoform Start | Isoform End | Isoform Strand | Overlap Bp | Query Overlap Per | Isoform Overlap Per | Noncoding | Promoter Per | Exonintron Per | End Per |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 34290 | ACSF2 | 13092 | uc002iqu.2 | chr17 | 48503519 | 48552200 | + | 1150 | 100.0 | 1.05 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (100), E11 (0), I11 (0), E12 (0), I12 (0), E13 (0), I13 (0), E14 (0), I14 (0), E15 (0), I15 (0), E16 (0) | 0.0 |
| 34290 | CHAD | 13093 | uc010dbr.3 | chr17 | 48541853 | 48546227 | - | 477 | 41.48 | 1.05 | 0 | 100.0 | E1 (41.48), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0) | 0.0 |
| 34290 | CHAD | 13093 | uc010dbs.3 | chr17 | 48541853 | 48546227 | - | 477 | 41.48 | 0.49 | 0 | 100.0 | E1 (41.48), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0) | 0.0 |
| 34290 | ACSF2 | 13092 | uc010dbt.1 | chr17 | 48545690 | 48552200 | + | 1150 | 100.0 | 0.49 | 0 | 38.17 | E1 (3.74), I1 (96.35), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0) | 0.0 |
| 34290 | ACSF2 | 13092 | uc010wml.1 | chr17 | 48503519 | 48552200 | + | 1150 | 100.0 | 0.45 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (100), E10 (0), I10 (0), E11 (0), I11 (0), E12 (0), I12 (0), E13 (0), I13 (0), E14 (0), I14 (0), E15 (0) | 0.0 |
| 34290 | ACSF2 | 13092 | uc010wmm.1 | chr17 | 48503519 | 48552200 | + | 1150 | 100.0 | 1.26 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0), I11 (100), E12 (0), I12 (0), E13 (0), I13 (0), E14 (0), I14 (0), E15 (0), I15 (0), E16 (0), I16 (0), E17 (0) | 0.0 |
| 34290 | ACSF2 | 13092 | uc010wmn.1 | chr17 | 48503519 | 48552200 | + | 1150 | 100.0 | 0.52 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (100), E11 (0), I11 (0), E12 (0), I12 (0), E13 (0), I13 (0), E14 (0), I14 (0), E15 (0), I15 (0), E16 (0) | 0.0 |
| 34290 | ACSF2 | 13092 | uc010wmo.1 | chr17 | 48503519 | 48552200 | + | 1150 | 100.0 | 1.53 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (100), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0), I11 (0), E12 (0), I12 (0), E13 (0), I13 (0), E14 (0) | 0.0 |
- 8 geness
Feature Overlaps
| Dmrid | Feature Chr | Feature Start | Feature End | Set | Name | Fields |
|---|---|---|---|---|---|---|
| 34290 | chr17 | 48545626 | 48547675 | wgEncodeRegDnaseClusteredV2 | 52 | score:1000, srow:501671 |
| 34290 | chr17 | 48545432 | 48547299 | wgEncodeRegTfbsClusteredV3 | EZH2 | score:726, expCount:5, expNums:21,36,38,40,43, expScores:550,212,188,236,452, srow:1728576 |
| 34290 | chr17 | 48546178 | 48546547 | wgEncodeRegTfbsClusteredV3 | MAZ | score:166, expCount:1, expNums:512, expScores:166, srow:1728577 |
| 34290 | chr17 | 48545747 | 48545768 | tfbsConsSites | V$OLF1_01 | score:832, zScore:2.3, srow:2190370 |
| 34290 | chr17 | 48545753 | 48545761 | tfbsConsSites | V$AP2ALPHA_01 | score:997, zScore:1.8, srow:2190371 |
| 34290 | chr17 | 48545753 | 48545761 | tfbsConsSites | V$AP2GAMMA_01 | score:992, zScore:1.95, srow:2190372 |
| 34290 | chr17 | 48545771 | 48545784 | tfbsConsSites | V$FAC1_01 | score:898, zScore:2.99, srow:2190373 |
| 34290 | chr17 | 48545778 | 48545783 | tfbsConsSites | V$AML1_01 | score:1000, zScore:1.78, srow:2190374 |
| 34290 | chr17 | 48545782 | 48545795 | tfbsConsSites | V$GATA1_02 | score:876, zScore:2.49, srow:2190375 |
| 34290 | chr17 | 48545840 | 48545853 | tfbsConsSites | V$OCT1_06 | score:865, zScore:1.72, srow:2190376 |
| 34290 | chr17 | 48545854 | 48545866 | tfbsConsSites | V$AREB6_01 | score:926, zScore:2.44, srow:2190377 |
| 34290 | chr17 | 48545926 | 48545937 | tfbsConsSites | V$LMO2COM_01 | score:928, zScore:1.83, srow:2190378 |
| 34290 | chr17 | 48545949 | 48545961 | tfbsConsSites | V$PAX3_01 | score:808, zScore:1.91, srow:2190379 |
| 34290 | chr17 | 48545967 | 48545984 | tfbsConsSites | V$NF1_Q6 | score:881, zScore:1.85, srow:2190380 |
| 34290 | chr17 | 48545983 | 48545992 | tfbsConsSites | V$NCX_01 | score:877, zScore:1.92, srow:2190381 |
| 34290 | chr17 | 48546021 | 48546037 | tfbsConsSites | V$LUN1_01 | score:731, zScore:2.15, srow:2190382 |
| 34290 | chr17 | 48546061 | 48546070 | tfbsConsSites | V$GATA1_05 | score:873, zScore:1.66, srow:2190383 |
| 34290 | chr17 | 48546087 | 48546104 | tfbsConsSites | V$CMYB_01 | score:813, zScore:2.11, srow:2190384 |
| 34290 | chr17 | 48546092 | 48546105 | tfbsConsSites | V$MEIS1AHOXA9_01 | score:814, zScore:2.22, srow:2190385 |
| 34290 | chr17 | 48546269 | 48546287 | tfbsConsSites | V$ER_Q6 | score:776, zScore:1.66, srow:2190386 |
| 34290 | chr17 | 48546272 | 48546287 | tfbsConsSites | V$ARP1_01 | score:788, zScore:1.65, srow:2190387 |
| 34290 | chr17 | 48546743 | 48546770 | tfbsConsSites | V$PAX5_02 | score:781, zScore:1.99, srow:2190388 |
| 34290 | chr17 | 48546748 | 48546765 | tfbsConsSites | V$AHR_01 | score:808, zScore:2.43, srow:2190389 |
| 34290 | chr17 | 48545752 | 48545752 | cosmic | COSM1384210 | srow:507789 |
| 34290 | chr17 | 48545768 | 48545768 | cosmic | COSM189438 | srow:507790 |
- Page 1 of 4
- Next
- 25 of 77 featuress
Omics Overlaps
| Dmrid | Omic Set | Data | Plot |
|---|---|---|---|
| 34290 | cellmeth_recounts | PrEC: 104, LNCaP: 255, DU145: 56 |  |
| 34290 | cellmeth_diffreps_PrECvsLNCaP | A=249, B=93, Length=540, Event=Down, log2FC=-1.42, padj=0 |  |
| 34290 | cellmeth_diffreps_PrECvsLNCaP | A=18, B=133, Length=940, Event=Up, log2FC=2.89, padj=0 |  |
| 34290 | cellmeth_diffreps_PrECvsDU145 | A=251, B=17, Length=660, Event=Down, log2FC=-3.88, padj=0 |  |
| 34290 | cellmeth_diffreps_PrECvsDU145 | A=0, B=11, Length=200, Event=Up, log2FC=Inf, padj=0.00313959514768542 |  |
| 34290 | cellmeth_diffreps_LNCaPvsDU145 | A=169.98, B=25.26, Length=980, Event=Down, log2FC=-2.75, padj=0 |  |
| 34290 | cellmeth_diffreps_LNCaPvsDU145 | A=69.49, B=14.03, Length=380, Event=Down, log2FC=-2.31, padj=7.93098025112592e-08 |  |
| 34290 | cellexp | id=ENSG00000136457, name=CHAD, PrEC=40, str=107, LNCaP=2, str=0, DU145=6, str=2 |  |
| 34290 | cellexp | id=ENSG00000167107, name=ACSF2, PrEC=2152, str=4580, LNCaP=496, str=241, DU145=366, str=162 |  |
| 34290 | tcgameth | site:cg05180443, B=0.13, L=0.47, H=0.43 |  |
| 34290 | tcgameth | site:cg06818777, B=0.22, L=0.41, H=0.4 |  |
| 34290 | tcgameth | site:cg10421979, B=0.18, L=0.53, H=0.49 |  |
| 34290 | tcgameth | site:cg15506894, B=0.8, L=0.86, H=0.85 |  |
| 34290 | tcgameth | site:cg15880760, B=0.24, L=0.55, H=0.52 |  |
| 34290 | tcgameth | site:cg17890928, B=0.21, L=0.49, H=0.48 |  |
| 34290 | tcgameth | site:cg19046826, B=0.21, L=0.55, H=0.52 |  |
| 34290 | tcgameth | site:cg19961043, B=0.12, L=0.47, H=0.43 |  |
| 34290 | tcgameth | site:cg25792518, B=0.35, L=0.74, H=0.68 |  |
| 34290 | tcgaexp | gene=CHAD, entrez=1101, pos=chr17:48541853-48546227(-), B=56, L=27, M=23, H=16 |  |
| 34290 | tcgaexp | gene=ACSF2, entrez=80221, pos=chr17:48503519-48552200(+), B=1931, L=751, M=700, H=532 |  |