DMR 34291 chr17:48549701-48549900 (200bp)
| DMR Stats | |
|---|---|
| Position | chr17:48549701-48549900 (View on UCSC) |
| Width | 200bp |
| Genomic Context | exon |
| Nearest Genes | ACSF2 (0bp away) |
| ANODEV p-value | 0.00188518324204 |
| Frequencies | Benign: 0.0 (0.0%), Low: 4.0 (66.67%), High: 8.0 (88.89 %) |
| Frequent? |
Region Count Boxplot
Region Overview
Gene Overlaps
| Dmrid | Gene Symbol | Gene Id | Isoform Id | Isoform Chr | Isoform Start | Isoform End | Isoform Strand | Overlap Bp | Query Overlap Per | Isoform Overlap Per | Noncoding | Promoter Per | Exonintron Per | End Per |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 34291 | ACSF2 | 13092 | uc002iqu.2 | chr17 | 48503519 | 48552200 | + | 200 | 100.0 | 4.19 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0), I11 (44), E12 (56), I12 (0), E13 (0), I13 (0), E14 (0), I14 (0), E15 (0), I15 (0), E16 (0) | 0.0 |
| 34291 | ACSF2 | 13092 | uc010dbt.1 | chr17 | 48545690 | 48552200 | + | 200 | 100.0 | 1.07 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (100), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0) | 0.0 |
| 34291 | ACSF2 | 13092 | uc010wml.1 | chr17 | 48503519 | 48552200 | + | 200 | 100.0 | 1.07 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (44), E11 (56), I11 (0), E12 (0), I12 (0), E13 (0), I13 (0), E14 (0), I14 (0), E15 (0) | 0.0 |
| 34291 | ACSF2 | 13092 | uc010wmm.1 | chr17 | 48503519 | 48552200 | + | 200 | 100.0 | 2.97 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0), I11 (0), E12 (0), I12 (44), E13 (56), I13 (0), E14 (0), I14 (0), E15 (0), I15 (0), E16 (0), I16 (0), E17 (0) | 0.0 |
| 34291 | ACSF2 | 13092 | uc010wmn.1 | chr17 | 48503519 | 48552200 | + | 200 | 100.0 | 2.96 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0), I11 (44), E12 (56), I12 (0), E13 (0), I13 (0), E14 (0), I14 (0), E15 (0), I15 (0), E16 (0) | 0.0 |
| 34291 | ACSF2 | 13092 | uc010wmo.1 | chr17 | 48503519 | 48552200 | + | 200 | 100.0 | 4.53 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (44), E10 (56), I10 (0), E11 (0), I11 (0), E12 (0), I12 (0), E13 (0), I13 (0), E14 (0) | 0.0 |
- 6 geness
Feature Overlaps
| Dmrid | Feature Chr | Feature Start | Feature End | Set | Name | Fields |
|---|---|---|---|---|---|---|
| 34291 | chr17 | 48549366 | 48549715 | wgEncodeRegDnaseClusteredV2 | 7 | score:290, srow:501674 |
| 34291 | chr17 | 48549830 | 48549849 | tfbsConsSites | V$P53_01 | score:719, zScore:2.47, srow:2190416 |
| 34291 | chr17 | 48549857 | 48549871 | tfbsConsSites | V$TAXCREB_02 | score:767, zScore:2.07, srow:2190417 |
| 34291 | chr17 | 48549861 | 48549883 | tfbsConsSites | V$PPARG_02 | score:709, zScore:2.17, srow:2190418 |
| 34291 | chr17 | 48549862 | 48549872 | tfbsConsSites | V$AP1_Q6 | score:910, zScore:1.66, srow:2190419 |
| 34291 | chr17 | 48549864 | 48549882 | tfbsConsSites | V$PAX2_01 | score:777, zScore:1.85, srow:2190420 |
| 34291 | chr17 | 48549867 | 48549879 | tfbsConsSites | V$TCF11_01 | score:954, zScore:2.39, srow:2190421 |
| 34291 | chr17 | 48549881 | 48549891 | tfbsConsSites | V$CP2_01 | score:934, zScore:2.66, srow:2190422 |
| 34291 | chr17 | 48549881 | 48549891 | tfbsConsSites | V$SREBP1_02 | score:831, zScore:1.99, srow:2190423 |
| 34291 | chr17 | 48549854 | 48549854 | cosmic | COSM386824 | srow:507803 |
| 34291 | chr17 | 48549866 | 48549866 | cosmic | COSM981040 | srow:507804 |
| 34291 | chr17 | 48549888 | 48549888 | cosmic | COSM1384213 | srow:507805 |
| 34291 | chr17 | 48549786 | 48549796 | phastConsElements100way | lod=124 | score:471, srow:3746704 |
| 34291 | chr17 | 48549798 | 48549802 | phastConsElements100way | lod=42 | score:363, srow:3746705 |
| 34291 | chr17 | 48549808 | 48549811 | phastConsElements100way | lod=24 | score:308, srow:3746706 |
| 34291 | chr17 | 48549813 | 48549814 | phastConsElements100way | lod=22 | score:300, srow:3746707 |
| 34291 | chr17 | 48549825 | 48549833 | phastConsElements100way | lod=69 | score:413, srow:3746708 |
| 34291 | chr17 | 48549840 | 48549856 | phastConsElements100way | lod=163 | score:498, srow:3746709 |
| 34291 | chr17 | 48549858 | 48549859 | phastConsElements100way | lod=44 | score:368, srow:3746710 |
| 34291 | chr17 | 48549861 | 48549865 | phastConsElements100way | lod=81 | score:429, srow:3746711 |
| 34291 | chr17 | 48549867 | 48549885 | phastConsElements100way | lod=259 | score:544, srow:3746712 |
| 34291 | chr17 | 48549888 | 48549892 | phastConsElements100way | lod=37 | score:351, srow:3746713 |
| 34291 | chr17 | 48549897 | 48549901 | phastConsElements100way | lod=59 | score:397, srow:3746714 |
| 34291 | chr17 | 48548901 | 48550900 | cpgShelf | — | values(x.gr)[overs$srow, ]:16906 |
- 24 featuress
Omics Overlaps
| Dmrid | Omic Set | Data | Plot |
|---|---|---|---|
| 34291 | cellmeth_recounts | PrEC: 16, LNCaP: 20, DU145: 0 |  |
| 34291 | cellmeth_diffreps_PrECvsDU145 | A=27, B=0, Length=400, Event=Down, log2FC=-Inf, padj=9.26891362789191e-08 |  |
| 34291 | cellmeth_diffreps_LNCaPvsDU145 | A=17.1, B=0, Length=280, Event=Down, log2FC=-Inf, padj=0.000215618666668937 |  |
| 34291 | cellexp | id=ENSG00000167107, name=ACSF2, PrEC=2152, str=4580, LNCaP=496, str=241, DU145=366, str=162 |  |
| 34291 | tcgaexp | gene=ACSF2, entrez=80221, pos=chr17:48503519-48552200(+), B=1931, L=751, M=700, H=532 |  |