DMR 34296 chr17:48712551-48712800 (250bp)

DMR Stats
Positionchr17:48712551-48712800 (View on UCSC)
Width250bp
Genomic Contextpromoter
Nearest GenesABCC3 (0bp away)
ANODEV p-value1.03593917796e-05
FrequenciesBenign: 0.0 (0.0%), Low: 4.0 (66.67%), High: 8.0 (88.89 %)
Frequent?

Region Count Boxplot

Region Overview

Gene Overlaps

Dmrid Gene Symbol Gene Id Isoform Id Isoform Chr Isoform Start Isoform End Isoform Strand Overlap Bp Query Overlap Per Isoform Overlap Per Noncoding Promoter Per Exonintron Per End Per
34296 ABCC3 13100 uc002isk.4 chr17 48712218 48745288 + 250 100.0 0.09 0 66.8 E1 (0), I1 (100), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0), I11 (0), E12 (0) 0.0
34296 ABCC3 13100 uc002isl.3 chr17 48712218 48769063 + 250 100.0 0.09 0 66.8 E1 (0), I1 (100), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0), I11 (0), E12 (0), I12 (0), E13 (0), I13 (0), E14 (0), I14 (0), E15 (0), I15 (0), E16 (0), I16 (0), E17 (0), I17 (0), E18 (0), I18 (0), E19 (0), I19 (0), E20 (0), I20 (0), E21 (0), I21 (0), E22 (0), I22 (0), E23 (0), I23 (0), E24 (0), I24 (0), E25 (0), I25 (0), E26 (0), I26 (0), E27 (0), I27 (0), E28 (0), I28 (0), E29 (0), I29 (0), E30 (0), I30 (0), E31 (0) 0.0
  • 2 geness

Feature Overlaps

Dmrid Feature Chr Feature Start Feature End Set Name Fields
34296 chr17 48712366 48713095 wgEncodeRegDnaseClusteredV2 40 score:735, srow:501873
34296 chr17 48711870 48712922 wgEncodeRegTfbsClusteredV3 POLR2A score:1000, expCount:15, expNums:61,62,78,163,168,192,249,259,402,445,446,596,599,613,632, expScores:265,197,335,706,607,306,260,260,459,435,319,494,173,175,586, srow:1729358
34296 chr17 48711885 48712944 wgEncodeRegTfbsClusteredV3 SUZ12 score:242, expCount:1, expNums:578, expScores:216, srow:1729359
34296 chr17 48711985 48713094 wgEncodeRegTfbsClusteredV3 EZH2 score:508, expCount:2, expNums:6,36, expScores:302,222, srow:1729367
34296 chr17 48712292 48712706 wgEncodeRegTfbsClusteredV3 CTCF score:355, expCount:15, expNums:598,628,639,642,646,647,650,661,663,667,669,671,677,678,687, expScores:182,203,183,180,122,355,125,103,127,183,122,150,141,130,249, srow:1729378
34296 chr17 48712319 48713332 wgEncodeRegTfbsClusteredV3 SIN3AK20 score:262, expCount:2, expNums:63,250, expScores:262,109, srow:1729379
34296 chr17 48712423 48712826 wgEncodeRegTfbsClusteredV3 MXI1 score:126, expCount:1, expNums:397, expScores:126, srow:1729380
34296 chr17 48712476 48712911 wgEncodeRegTfbsClusteredV3 ELF1 score:249, expCount:1, expNums:50, expScores:249, srow:1729381
34296 chr17 48712493 48712802 wgEncodeRegTfbsClusteredV3 MYC score:311, expCount:1, expNums:624, expScores:311, srow:1729382
34296 chr17 48712507 48713036 wgEncodeRegTfbsClusteredV3 TFAP2A score:377, expCount:1, expNums:369, expScores:377, srow:1729383
34296 chr17 48712514 48713230 wgEncodeRegTfbsClusteredV3 TFAP2C score:497, expCount:1, expNums:370, expScores:146, srow:1729384
34296 chr17 48712526 48713065 wgEncodeRegTfbsClusteredV3 EP300 score:222, expCount:1, expNums:60, expScores:222, srow:1729385
34296 chr17 48712530 48712853 wgEncodeRegTfbsClusteredV3 CEBPB score:1000, expCount:9, expNums:172,212,277,343,378,425,426,462,477, expScores:440,170,1000,774,1000,506,1000,944,389, srow:1729386
34296 chr17 48712547 48712822 wgEncodeRegTfbsClusteredV3 CEBPD score:201, expCount:1, expNums:173, expScores:201, srow:1729387
34296 chr17 48712583 48712978 wgEncodeRegTfbsClusteredV3 MAX score:155, expCount:1, expNums:395, expScores:155, srow:1729388
34296 chr17 48712051 48712705 cpgIsland CpG: 77 length:655, cpgNum:77, gcNum:500, perCpg:23.5, perGc:76.3, obsExp:0.81, srow:10883
34296 chr17 48712706 48714705 cpgShore — values(x.gr)[overs$srow, ]:19849
  • 17 featuress

Omics Overlaps

Dmrid Omic Set Data Plot
34296 cellmeth_recounts PrEC: 0, LNCaP: 369, DU145: 0
34296 cellmeth_diffreps_PrECvsLNCaP A=23, B=854, Length=1360, Event=Up, log2FC=5.21, padj=0
34296 cellmeth_diffreps_LNCaPvsDU145 A=952.52, B=5.61, Length=1920, Event=Down, log2FC=-7.41, padj=0
34296 cellexp id=ENSG00000108846, name=ABCC3, PrEC=6346, str=3217, LNCaP=73, str=7, DU145=10284, str=10182
34296 tcgaexp gene=ABCC3, entrez=8714, pos=chr17:48712218-48769063(+), B=1505, L=616, M=605, H=574