DMR 34364 chr17:62775951-62777850 (1900bp)
| DMR Stats | |
|---|---|
| Position | chr17:62775951-62777850 (View on UCSC) |
| Width | 1900bp |
| Genomic Context | promoter |
| Nearest Genes | LOC146880, PLEKHM1P (0bp away) |
| ANODEV p-value | 0.000270198004502 |
| Frequencies | Benign: 0.0 (0.0%), Low: 4.0 (66.67%), High: 4.0 (44.44 %) |
| Frequent? |
Region Count Boxplot
Region Overview
Gene Overlaps
| Dmrid | Gene Symbol | Gene Id | Isoform Id | Isoform Chr | Isoform Start | Isoform End | Isoform Strand | Overlap Bp | Query Overlap Per | Isoform Overlap Per | Noncoding | Promoter Per | Exonintron Per | End Per |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 34364 | LOC146880 | 13277 | uc002jet.1 | chr17 | 62758473 | 62777825 | - | 1875 | 98.68 | 0.83 | 1 | 27.63 | E1 (14.42), I1 (20.79), E2 (36.68), I2 (7.26), E3 (11.84), I3 (7.79), E4 (0), I4 (0), E5 (0) | 0.0 |
| 34364 | LOC146880 | 13277 | uc002jeu.3 | chr17 | 62774257 | 62777622 | - | 1672 | 88.0 | 1.57 | 0 | 38.32 | E1 (5.79), I1 (18.74), E2 (36.68), I2 (7.26), E3 (19.63) | 0.0 |
| 34364 | PLEKHM1P | 13278 | uc002jev.3 | chr17 | 62775189 | 62833302 | - | 1900 | 100.0 | 0.18 | 1 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0), I11 (0), E12 (0), I12 (0), E13 (0), I13 (6.16), E14 (9.63), I14 (20.79), E15 (36.68), I15 (7.26), E16 (11.84), I16 (7.79), E17 (0), I17 (0), E18 (0), I18 (0), E19 (0) | 12.53 |
| 34364 | LOC146880 | 13277 | uc010wqc.2 | chr17 | 62745780 | 62778117 | - | 1900 | 100.0 | 0.14 | 1 | 12.26 | E1 (0), I1 (2.79), E2 (13), I2 (20.79), E3 (36.68), I3 (26.84), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0), I11 (0), E12 (0), I12 (0), E13 (0) | 0.0 |
| 34364 | LOC146880 | 13277 | uc010wqd.1 | chr17 | 62758473 | 62777825 | - | 1875 | 98.68 | 0.18 | 0 | 27.63 | E1 (14.42), I1 (20.79), E2 (36.68), I2 (26.84), E3 (0), I3 (0), E4 (0) | 0.0 |
- 5 geness
Feature Overlaps
| Dmrid | Feature Chr | Feature Start | Feature End | Set | Name | Fields |
|---|---|---|---|---|---|---|
| 34364 | chr17 | 62775946 | 62778435 | wgEncodeRegDnaseClusteredV2 | 92 | score:1000, srow:509131 |
| 34364 | chr17 | 62774168 | 62776039 | wgEncodeRegTfbsClusteredV3 | EZH2 | score:642, expCount:6, expNums:3,6,36,38,40,43, expScores:186,298,219,201,275,642, srow:1761673 |
| 34364 | chr17 | 62776405 | 62777893 | wgEncodeRegTfbsClusteredV3 | POLR2A | score:1000, expCount:11, expNums:62,78,163,206,207,577,599,619,632,633,634, expScores:210,248,678,196,341,185,127,135,352,282,273, srow:1761680 |
| 34364 | chr17 | 62776420 | 62776757 | wgEncodeRegTfbsClusteredV3 | STAT3 | score:239, expCount:2, expNums:566,569, expScores:160,239, srow:1761681 |
| 34364 | chr17 | 62776427 | 62776799 | wgEncodeRegTfbsClusteredV3 | MYC | score:359, expCount:2, expNums:624,626, expScores:359,265, srow:1761682 |
| 34364 | chr17 | 62776480 | 62776709 | wgEncodeRegTfbsClusteredV3 | CTCF | score:295, expCount:3, expNums:628,629,631, expScores:295,275,187, srow:1761683 |
| 34364 | chr17 | 62777133 | 62777372 | wgEncodeRegTfbsClusteredV3 | CTCF | score:498, expCount:4, expNums:628,629,630,631, expScores:498,389,182,335, srow:1761684 |
| 34364 | chr17 | 62777210 | 62777772 | wgEncodeRegTfbsClusteredV3 | MYC | score:224, expCount:2, expNums:624,626, expScores:217,213, srow:1761685 |
| 34364 | chr17 | 62777407 | 62777716 | wgEncodeRegTfbsClusteredV3 | NR3C1 | score:147, expCount:1, expNums:58, expScores:147, srow:1761686 |
| 34364 | chr17 | 62777526 | 62777925 | wgEncodeRegTfbsClusteredV3 | FOS | score:141, expCount:1, expNums:457, expScores:141, srow:1761687 |
| 34364 | chr17 | 62776579 | 62776585 | phastConsElements100way | lod=15 | score:262, srow:3810740 |
| 34364 | chr17 | 62777605 | 62777612 | phastConsElements100way | lod=13 | score:247, srow:3810741 |
| 34364 | chr17 | 62777650 | 62777654 | phastConsElements100way | lod=14 | score:255, srow:3810742 |
| 34364 | chr17 | 62777657 | 62777737 | phastConsElements100way | lod=123 | score:470, srow:3810743 |
| 34364 | chr17 | 62777745 | 62777786 | phastConsElements100way | lod=81 | score:429, srow:3810744 |
| 34364 | chr17 | 62777847 | 62777866 | phastConsElements100way | lod=13 | score:247, srow:3810745 |
| 34364 | chr17 | 62774367 | 62777797 | cpgIsland | CpG: 285 | length:3431, cpgNum:285, gcNum:2186, perCpg:16.6, perGc:63.7, obsExp:0.82, srow:11011 |
| 34364 | chr17 | 62777798 | 62779797 | cpgShore | — | values(x.gr)[overs$srow, ]:20086 |
- 18 featuress
Omics Overlaps
| Dmrid | Omic Set | Data | Plot |
|---|---|---|---|
| 34364 | cellmeth_recounts | PrEC: 0, LNCaP: 3708, DU145: 10 |  |
| 34364 | cellmeth_diffreps_PrECvsLNCaP | A=39, B=8423, Length=4360, Event=Up, log2FC=7.75, padj=0 |  |
| 34364 | cellmeth_diffreps_LNCaPvsDU145 | A=9017.39, B=96.35, Length=4560, Event=Down, log2FC=-6.55, padj=0 |  |
| 34364 | cellexp | id=ENSG00000214176, name=PLEKHM1P, PrEC=886, str=3251, LNCaP=736, str=258, DU145=1007, str=855 |  |
| 34364 | cellexp | id=ENSG00000215769, name=hsa-mir-6080, PrEC=25, str=229, LNCaP=66, str=16, DU145=56, str=33 |  |
| 34364 | tcgameth | site:cg01720033, B=0.17, L=0.53, H=0.37 |  |
| 34364 | tcgameth | site:cg02598441, B=0.19, L=0.67, H=0.46 |  |
| 34364 | tcgameth | site:cg05721365, B=0.1, L=0.54, H=0.35 |  |
| 34364 | tcgameth | site:cg11849086, B=0.1, L=0.53, H=0.34 |  |
| 34364 | tcgameth | site:cg12854371, B=0.21, L=0.56, H=0.41 |  |
| 34364 | tcgameth | site:cg13717446, B=0.13, L=0.59, H=0.39 |  |
| 34364 | tcgameth | site:cg16561266, B=0.13, L=0.6, H=0.4 |  |
| 34364 | tcgameth | site:cg17840858, B=0.36, L=0.54, H=0.47 |  |
| 34364 | tcgaexp | gene=LOC146880, entrez=146880, pos=chr17:62745780-62778117(-), B=381, L=413, M=441, H=515 |  |
| 34364 | tcgaexp | gene=PLEKHM1P, entrez=440456, pos=chr17:62775189-62833302(-), B=512, L=304, M=328, H=350 |  |