DMR 34484 chr17:75953551-75953700 (150bp)

DMR Stats
Positionchr17:75953551-75953700 (View on UCSC)
Width150bp
Genomic Contextintergenic
Nearest Genesseptin 9/TNRC6C fusion (46550bp away)
ANODEV p-value0.0052227420763
FrequenciesBenign: 0.0 (0.0%), Low: 2.0 (33.33%), High: 6.0 (66.67 %)
Frequent?

Region Count Boxplot

Region Overview

Gene Overlaps

Dmrid Gene Symbol Gene Id Isoform Id Isoform Chr Isoform Start Isoform End Isoform Strand Overlap Bp Query Overlap Per Isoform Overlap Per Noncoding Promoter Per Exonintron Per End Per

Feature Overlaps

Dmrid Feature Chr Feature Start Feature End Set Name Fields
34484 chr17 75953301 75954395 wgEncodeRegDnaseClusteredV2 76 score:1000, srow:518806
34484 chr17 75953318 75954306 wgEncodeRegTfbsClusteredV3 EZH2 score:661, expCount:3, expNums:13,25,40, expScores:370,283,312, srow:1799544
34484 chr17 75953339 75953778 wgEncodeRegTfbsClusteredV3 CBX3 score:271, expCount:1, expNums:211, expScores:271, srow:1799545
34484 chr17 75953453 75953822 wgEncodeRegTfbsClusteredV3 RUNX3 score:296, expCount:1, expNums:109, expScores:296, srow:1799546
34484 chr17 75953463 75953786 wgEncodeRegTfbsClusteredV3 CEBPB score:703, expCount:5, expNums:212,277,426,462,477, expScores:653,355,236,320,703, srow:1799547
34484 chr17 75953573 75954008 wgEncodeRegTfbsClusteredV3 MXI1 score:180, expCount:1, expNums:298, expScores:180, srow:1799548
34484 chr17 75953580 75954281 wgEncodeRegTfbsClusteredV3 CHD1 score:173, expCount:2, expNums:23,287, expScores:140,168, srow:1799549
34484 chr17 75953672 75953684 tfbsConsSites V$IK3_01 score:862, zScore:1.91, srow:2261346
34484 chr17 75953570 75953578 phastConsElements100way lod=15 score:262, srow:3861522
34484 chr17 75953586 75953589 phastConsElements100way lod=14 score:255, srow:3861523
34484 chr17 75953591 75953594 phastConsElements100way lod=14 score:255, srow:3861524
34484 chr17 75953597 75953619 phastConsElements100way lod=54 score:388, srow:3861525
34484 chr17 75953674 75953687 phastConsElements100way lod=17 score:274, srow:3861526
34484 chr17 75953700 75953703 phastConsElements100way lod=15 score:262, srow:3861527
34484 chr17 75951891 75953890 cpgShore — values(x.gr)[overs$srow, ]:20410
  • 15 featuress

Omics Overlaps

Dmrid Omic Set Data Plot
34484 cellmeth_recounts PrEC: 7, LNCaP: 129, DU145: 0
34484 cellmeth_diffreps_PrECvsLNCaP A=12, B=287, Length=840, Event=Up, log2FC=4.58, padj=0
34484 cellmeth_diffreps_PrECvsDU145 A=11, B=0, Length=200, Event=Down, log2FC=-Inf, padj=0.00313959514768542
34484 cellmeth_diffreps_LNCaPvsDU145 A=306.82, B=0, Length=880, Event=Down, log2FC=-Inf, padj=0