DMR 34485 chr17:75956151-75956550 (400bp)

DMR Stats
Positionchr17:75956151-75956550 (View on UCSC)
Width400bp
Genomic Contextintergenic
Nearest Genesseptin 9/TNRC6C fusion (43700bp away)
ANODEV p-value0.000205036232538
FrequenciesBenign: 0.0 (0.0%), Low: 5.0 (83.33%), High: 9.0 (100.0 %)
Frequent?

Region Count Boxplot

Region Overview

Gene Overlaps

Dmrid Gene Symbol Gene Id Isoform Id Isoform Chr Isoform Start Isoform End Isoform Strand Overlap Bp Query Overlap Per Isoform Overlap Per Noncoding Promoter Per Exonintron Per End Per

Feature Overlaps

Dmrid Feature Chr Feature Start Feature End Set Name Fields
34485 chr17 75955166 75956275 wgEncodeRegDnaseClusteredV2 71 score:1000, srow:518809
34485 chr17 75956281 75956755 wgEncodeRegDnaseClusteredV2 43 score:331, srow:518810
34485 chr17 75955509 75956343 wgEncodeRegTfbsClusteredV3 EZH2 score:372, expCount:1, expNums:40, expScores:322, srow:1799636
34485 chr17 75955626 75956229 wgEncodeRegTfbsClusteredV3 GATA1 score:263, expCount:2, expNums:497,582, expScores:124,263, srow:1799637
34485 chr17 75955733 75956176 wgEncodeRegTfbsClusteredV3 GATA2 score:1000, expCount:3, expNums:459,498,586, expScores:229,179,1000, srow:1799640
34485 chr17 75955735 75956313 wgEncodeRegTfbsClusteredV3 E2F6 score:311, expCount:2, expNums:215,495, expScores:165,135, srow:1799641
34485 chr17 75955797 75956412 wgEncodeRegTfbsClusteredV3 CHD1 score:296, expCount:1, expNums:4, expScores:296, srow:1799642
34485 chr17 75955914 75956549 wgEncodeRegTfbsClusteredV3 POLR2A score:267, expCount:1, expNums:147, expScores:267, srow:1799643
34485 chr17 75955992 75956587 wgEncodeRegTfbsClusteredV3 ZNF263 score:330, expCount:1, expNums:368, expScores:330, srow:1799644
34485 chr17 75956100 75956860 wgEncodeRegTfbsClusteredV3 KAP1 score:429, expCount:2, expNums:365,588, expScores:429,379, srow:1799645
34485 chr17 75956144 75956479 wgEncodeRegTfbsClusteredV3 YY1 score:182, expCount:1, expNums:162, expScores:182, srow:1799646
34485 chr17 75956150 75956162 tfbsConsSites V$ZID_01 score:854, zScore:1.81, srow:2261408
34485 chr17 75956242 75956256 tfbsConsSites V$HNF4_01_B score:830, zScore:2.04, srow:2261409
34485 chr17 75956321 75956337 tfbsConsSites V$YY1_01 score:907, zScore:2.55, srow:2261410
34485 chr17 75956399 75956412 tfbsConsSites V$SOX9_B1 score:888, zScore:2.24, srow:2261411
34485 chr17 75956429 75956444 tfbsConsSites V$HAND1E47_01 score:855, zScore:2.02, srow:2261412
34485 chr17 75956266 75956290 phastConsElements100way lod=48 score:377, srow:3861549
34485 chr17 75956320 75956336 phastConsElements100way lod=78 score:425, srow:3861550
34485 chr17 75956401 75956408 phastConsElements100way lod=21 score:295, srow:3861551
34485 chr17 75955953 75957952 cpgShore — values(x.gr)[overs$srow, ]:20411
  • 20 featuress

Omics Overlaps

Dmrid Omic Set Data Plot
34485 cellmeth_recounts PrEC: 21, LNCaP: 1246, DU145: 10
34485 cellmeth_diffreps_PrECvsLNCaP A=31, B=1188, Length=1080, Event=Up, log2FC=5.26, padj=0
34485 cellmeth_diffreps_PrECvsDU145 A=31, B=5, Length=380, Event=Down, log2FC=-2.63, padj=0.000268098041907711
34485 cellmeth_diffreps_LNCaPvsDU145 A=1270.03, B=13.1, Length=1060, Event=Down, log2FC=-6.6, padj=0
34485 tcgameth site:cg00142402, B=0.31, L=0.4, H=0.36
34485 tcgameth site:cg11200656, B=0.45, L=0.58, H=0.54