DMR 34508 chr17:77777401-77777950 (550bp)

DMR Stats
Positionchr17:77777401-77777950 (View on UCSC)
Width550bp
Genomic Contextintergenic
Nearest GenesCBX8 (6485bp away)
ANODEV p-value7.48794998229e-09
FrequenciesBenign: 0.0 (0.0%), Low: 0.0 (0.0%), High: 1.0 (11.11 %)
Frequent?

Region Count Boxplot

Region Overview

Gene Overlaps

Dmrid Gene Symbol Gene Id Isoform Id Isoform Chr Isoform Start Isoform End Isoform Strand Overlap Bp Query Overlap Per Isoform Overlap Per Noncoding Promoter Per Exonintron Per End Per

Feature Overlaps

Dmrid Feature Chr Feature Start Feature End Set Name Fields
34508 chr17 77777581 77777770 wgEncodeRegDnaseClusteredV2 4 score:247, srow:520620
34508 chr17 77771478 77779197 wgEncodeRegTfbsClusteredV3 EZH2 score:1000, expCount:12, expNums:1,3,6,13,15,17,19,21,36,38,40,43, expScores:436,205,272,311,257,167,98,394,230,318,311,284, srow:1806495
34508 chr17 77776360 77777460 wgEncodeRegTfbsClusteredV3 POLR2A score:872, expCount:10, expNums:32,228,229,520,521,522,523,524,525,622, expScores:172,351,358,207,189,408,251,211,300,438, srow:1806547
34508 chr17 77776997 77777814 wgEncodeRegTfbsClusteredV3 ZNF263 score:663, expCount:2, expNums:368,553, expScores:424,188, srow:1806586
34508 chr17 77777007 77777582 wgEncodeRegTfbsClusteredV3 KDM5B score:178, expCount:1, expNums:31, expScores:178, srow:1806588
34508 chr17 77777772 77778727 wgEncodeRegTfbsClusteredV3 SUZ12 score:122, expCount:2, expNums:358,578, expScores:121,122, srow:1806589
34508 chr17 77777831 77778418 wgEncodeRegTfbsClusteredV3 POLR2A score:539, expCount:5, expNums:105,256,328,330,577, expScores:539,149,228,266,398, srow:1806590
34508 chr17 77777885 77778320 wgEncodeRegTfbsClusteredV3 MAX score:312, expCount:2, expNums:296,576, expScores:174,312, srow:1806591
34508 chr17 77777945 77778600 wgEncodeRegTfbsClusteredV3 E2F1 score:290, expCount:1, expNums:572, expScores:290, srow:1806592
34508 chr17 77777544 77777558 tfbsConsSites V$EVI1_04 score:850, zScore:2.56, srow:2264368
34508 chr17 77777844 77777855 tfbsConsSites V$E2F_03 score:864, zScore:1.94, srow:2264369
34508 chr17 77777845 77777859 tfbsConsSites V$TAXCREB_01 score:831, zScore:2.65, srow:2264370
34508 chr17 77777848 77777864 tfbsConsSites V$PPARG_03 score:814, zScore:2.45, srow:2264371
34508 chr17 77777560 77777580 phastConsElements100way lod=62 score:402, srow:3868776
34508 chr17 77770673 77778468 cpgIsland CpG: 527 length:7796, cpgNum:527, gcNum:4568, perCpg:13.5, perGc:58.6, obsExp:0.79, srow:11232
  • 15 featuress

Omics Overlaps

Dmrid Omic Set Data Plot
34508 cellmeth_recounts PrEC: 3, LNCaP: 695, DU145: 14
34508 cellmeth_diffreps_PrECvsLNCaP A=14, B=1936, Length=3260, Event=Up, log2FC=7.11, padj=0
34508 cellmeth_diffreps_LNCaPvsDU145 A=1969.18, B=18.71, Length=2320, Event=Down, log2FC=-6.72, padj=0
34508 tcgameth site:cg06332173, B=0.18, L=0.24, H=0.29
34508 tcgameth site:cg06759189, B=0.05, L=0.18, H=0.2
34508 tcgameth site:cg14409414, B=0.04, L=0.08, H=0.11
34508 tcgameth site:cg14530304, B=0.2, L=0.36, H=0.29