DMR 34595 chr18:2855651-2856000 (350bp)
| DMR Stats | |
|---|---|
| Position | chr18:2855651-2856000 (View on UCSC) |
| Width | 350bp |
| Genomic Context | intron |
| Nearest Genes | EMILIN2 (0bp away) |
| ANODEV p-value | 3.22236913092e-08 |
| Frequencies | Benign: 0.0 (0.0%), Low: 5.0 (83.33%), High: 9.0 (100.0 %) |
| Frequent? |
Region Count Boxplot
Region Overview
Gene Overlaps
| Dmrid | Gene Symbol | Gene Id | Isoform Id | Isoform Chr | Isoform Start | Isoform End | Isoform Strand | Overlap Bp | Query Overlap Per | Isoform Overlap Per | Noncoding | Promoter Per | Exonintron Per | End Per |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 34595 | EMILIN2 | 13646 | uc002kln.3 | chr18 | 2847028 | 2914090 | + | 350 | 100.0 | 0.03 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (100), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0) | 0.0 |
- 1 genes
Feature Overlaps
| Dmrid | Feature Chr | Feature Start | Feature End | Set | Name | Fields |
|---|---|---|---|---|---|---|
| 34595 | chr18 | 2855606 | 2856015 | wgEncodeRegDnaseClusteredV2 | 20 | score:314, srow:525214 |
| 34595 | chr18 | 2855386 | 2855775 | wgEncodeRegTfbsClusteredV3 | MAX | score:233, expCount:1, expNums:223, expScores:233, srow:1826544 |
| 34595 | chr18 | 2855448 | 2855691 | wgEncodeRegTfbsClusteredV3 | EGR1 | score:199, expCount:1, expNums:216, expScores:199, srow:1826545 |
| 34595 | chr18 | 2855473 | 2856122 | wgEncodeRegTfbsClusteredV3 | POLR2A | score:186, expCount:1, expNums:524, expScores:186, srow:1826546 |
| 34595 | chr18 | 2855708 | 2856071 | wgEncodeRegTfbsClusteredV3 | TEAD4 | score:328, expCount:1, expNums:240, expScores:328, srow:1826547 |
| 34595 | chr18 | 2855709 | 2855988 | wgEncodeRegTfbsClusteredV3 | MAFK | score:289, expCount:1, expNums:510, expScores:289, srow:1826548 |
| 34595 | chr18 | 2855733 | 2856008 | wgEncodeRegTfbsClusteredV3 | TAL1 | score:146, expCount:1, expNums:542, expScores:146, srow:1826549 |
| 34595 | chr18 | 2855768 | 2856091 | wgEncodeRegTfbsClusteredV3 | CEBPB | score:860, expCount:4, expNums:212,425,426,477, expScores:261,182,354,860, srow:1826550 |
- 8 featuress
Omics Overlaps
| Dmrid | Omic Set | Data | Plot |
|---|---|---|---|
| 34595 | cellmeth_recounts | PrEC: 5, LNCaP: 6, DU145: 36 |  |
| 34595 | cellmeth_diffreps_LNCaPvsDU145 | A=0, B=12.16, Length=220, Event=Up, log2FC=Inf, padj=0.0042937397703766 |  |
| 34595 | cellexp | id=ENSG00000132205, name=EMILIN2, PrEC=90, str=27, LNCaP=19, str=3, DU145=1494, str=1412 |  |
| 34595 | tcgaexp | gene=EMILIN2, entrez=84034, pos=chr18:2847028-2914090(+), B=535, L=736, M=783, H=675 |  |