DMR 34738 chr18:55106501-55109200 (2700bp)

DMR Stats
Positionchr18:55106501-55109200 (View on UCSC)
Width2700bp
Genomic Contextintron
Nearest GenesONECUT2 (0bp away)
ANODEV p-value1.08112749061e-05
FrequenciesBenign: 0.0 (0.0%), Low: 4.0 (66.67%), High: 6.0 (66.67 %)
Frequent?

Region Count Boxplot

Region Overview

Gene Overlaps

Dmrid Gene Symbol Gene Id Isoform Id Isoform Chr Isoform Start Isoform End Isoform Strand Overlap Bp Query Overlap Per Isoform Overlap Per Noncoding Promoter Per Exonintron Per End Per
34738 ONECUT2 13982 uc002lgo.3 chr18 55102917 55158530 + 2700 100.0 0.04 0 0.0 E1 (0), I1 (100), E2 (0) 0.0
  • 1 genes

Feature Overlaps

Dmrid Feature Chr Feature Start Feature End Set Name Fields
34738 chr18 55105926 55107615 wgEncodeRegDnaseClusteredV2 47 score:1000, srow:545401
34738 chr18 55107646 55107955 wgEncodeRegDnaseClusteredV2 13 score:225, srow:545402
34738 chr18 55108086 55109030 wgEncodeRegDnaseClusteredV2 60 score:644, srow:545403
34738 chr18 55103099 55109197 wgEncodeRegTfbsClusteredV3 EZH2 score:1000, expCount:9, expNums:6,15,17,19,21,36,38,40,43, expScores:833,532,213,95,323,217,203,219,356, srow:1884144
34738 chr18 55106123 55106526 wgEncodeRegTfbsClusteredV3 MXI1 score:231, expCount:1, expNums:397, expScores:231, srow:1884170
34738 chr18 55106125 55106520 wgEncodeRegTfbsClusteredV3 MAX score:365, expCount:3, expNums:278,395,576, expScores:192,365,222, srow:1884171
34738 chr18 55106803 55107612 wgEncodeRegTfbsClusteredV3 SUZ12 score:160, expCount:1, expNums:578, expScores:160, srow:1884176
34738 chr18 55107493 55108162 wgEncodeRegTfbsClusteredV3 RBBP5 score:211, expCount:1, expNums:8, expScores:211, srow:1884177
34738 chr18 55107705 55108014 wgEncodeRegTfbsClusteredV3 SUZ12 score:229, expCount:1, expNums:358, expScores:229, srow:1884178
34738 chr18 55107971 55108480 wgEncodeRegTfbsClusteredV3 E2F6 score:128, expCount:1, expNums:386, expScores:128, srow:1884179
34738 chr18 55108024 55108399 wgEncodeRegTfbsClusteredV3 TBP score:106, expCount:1, expNums:412, expScores:106, srow:1884180
34738 chr18 55108063 55108392 wgEncodeRegTfbsClusteredV3 MAX score:152, expCount:1, expNums:352, expScores:152, srow:1884181
34738 chr18 55108342 55108713 wgEncodeRegTfbsClusteredV3 STAT3 score:220, expCount:2, expNums:411,569, expScores:154,220, srow:1884182
34738 chr18 55108384 55108697 wgEncodeRegTfbsClusteredV3 POLR2A score:369, expCount:1, expNums:402, expScores:369, srow:1884183
34738 chr18 55108405 55108636 wgEncodeRegTfbsClusteredV3 STAT1 score:757, expCount:1, expNums:410, expScores:757, srow:1884184
34738 chr18 55108417 55108786 wgEncodeRegTfbsClusteredV3 E2F1 score:1000, expCount:2, expNums:384,390, expScores:673,1000, srow:1884185
34738 chr18 55108504 55108703 wgEncodeRegTfbsClusteredV3 CTCF score:138, expCount:1, expNums:597, expScores:138, srow:1884186
34738 chr18 55108550 55109039 wgEncodeRegTfbsClusteredV3 TAF1 score:369, expCount:2, expNums:157,169, expScores:186,369, srow:1884187
34738 chr18 55108558 55108861 wgEncodeRegTfbsClusteredV3 BRCA1 score:151, expCount:1, expNums:374, expScores:151, srow:1884188
34738 chr18 55108566 55108895 wgEncodeRegTfbsClusteredV3 CHD2 score:518, expCount:2, expNums:345,380, expScores:477,518, srow:1884189
34738 chr18 55108704 55108998 wgEncodeRegTfbsClusteredV3 POLR2A score:522, expCount:2, expNums:168,402, expScores:522,372, srow:1884190
34738 chr18 55108810 55109045 wgEncodeRegTfbsClusteredV3 BATF score:257, expCount:1, expNums:81, expScores:257, srow:1884191
34738 chr18 55106628 55106641 tfbsConsSites V$OCT1_06 score:876, zScore:1.95, srow:2377414
34738 chr18 55106711 55106717 tfbsConsSites V$EN1_01 score:988, zScore:2.09, srow:2377415
34738 chr18 55106725 55106734 tfbsConsSites V$NKX22_01 score:897, zScore:2.08, srow:2377416
  • Page 1 of 3
  • 25 of 64 featuress

Omics Overlaps

Dmrid Omic Set Data Plot
34738 cellmeth_recounts PrEC: 5, LNCaP: 1842, DU145: 42
34738 cellmeth_diffreps_PrECvsLNCaP A=25, B=5857, Length=6280, Event=Up, log2FC=7.87, padj=0
34738 cellmeth_diffreps_LNCaPvsDU145 A=6261.4, B=65.48, Length=6260, Event=Down, log2FC=-6.58, padj=0
34738 cellexp id=ENSG00000119547, name=ONECUT2, PrEC=9, str=28, LNCaP=624, str=844, DU145=53, str=37
34738 tcgameth site:cg01193769, B=0.2, L=0.47, H=0.44
34738 tcgameth site:cg03636532, B=0.27, L=0.54, H=0.5
34738 tcgameth site:cg04115544, B=0.16, L=0.3, H=0.32
34738 tcgameth site:cg10835584, B=0.1, L=0.42, H=0.42
34738 tcgameth site:cg13518992, B=0.13, L=0.47, H=0.44
34738 tcgameth site:cg16941302, B=0.13, L=0.4, H=0.4
34738 tcgameth site:cg20956738, B=0.18, L=0.48, H=0.46
34738 tcgameth site:cg24771804, B=0.14, L=0.42, H=0.41
34738 tcgameth site:cg27358469, B=0.25, L=0.5, H=0.49
34738 tcgaexp gene=ONECUT2, entrez=9480, pos=chr18:55102917-55158530(+), B=84, L=437, M=489, H=789