DMR 34817 chr19:343251-343800 (550bp)
| DMR Stats | |
|---|---|
| Position | chr19:343251-343800 (View on UCSC) |
| Width | 550bp |
| Genomic Context | intron |
| Nearest Genes | MIER2 (0bp away) |
| ANODEV p-value | 0.0033161171504 |
| Frequencies | Benign: 0.0 (0.0%), Low: 4.0 (66.67%), High: 7.0 (77.78 %) |
| Frequent? |
Region Count Boxplot
Region Overview
Gene Overlaps
| Dmrid | Gene Symbol | Gene Id | Isoform Id | Isoform Chr | Isoform Start | Isoform End | Isoform Strand | Overlap Bp | Query Overlap Per | Isoform Overlap Per | Noncoding | Promoter Per | Exonintron Per | End Per |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 34817 | MIER2 | 14096 | uc002lok.1 | chr19 | 305575 | 344791 | - | 550 | 100.0 | 0.16 | 0 | 0.0 | E1 (0), I1 (100), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0), I11 (0), E12 (0), I12 (0), E13 (0), I13 (0), E14 (0) | 0.0 |
- 1 genes
Feature Overlaps
| Dmrid | Feature Chr | Feature Start | Feature End | Set | Name | Fields |
|---|---|---|---|---|---|---|
| 34817 | chr19 | 343121 | 344655 | wgEncodeRegDnaseClusteredV2 | 91 | score:1000, srow:555700 |
| 34817 | chr19 | 342665 | 343688 | wgEncodeRegTfbsClusteredV3 | POLR2A | score:454, expCount:6, expNums:32,206,207,461,465,619, expScores:249,340,279,185,229,147, srow:1907368 |
| 34817 | chr19 | 342966 | 343689 | wgEncodeRegTfbsClusteredV3 | RBBP5 | score:226, expCount:1, expNums:33, expScores:226, srow:1907376 |
| 34817 | chr19 | 342968 | 343787 | wgEncodeRegTfbsClusteredV3 | CHD1 | score:224, expCount:1, expNums:23, expScores:214, srow:1907377 |
| 34817 | chr19 | 342969 | 343492 | wgEncodeRegTfbsClusteredV3 | HDAC1 | score:184, expCount:1, expNums:26, expScores:184, srow:1907378 |
| 34817 | chr19 | 342998 | 343840 | wgEncodeRegTfbsClusteredV3 | ZNF263 | score:482, expCount:1, expNums:368, expScores:234, srow:1907379 |
| 34817 | chr19 | 343111 | 343409 | wgEncodeRegTfbsClusteredV3 | MAX | score:347, expCount:1, expNums:223, expScores:347, srow:1907380 |
| 34817 | chr19 | 343424 | 343853 | wgEncodeRegTfbsClusteredV3 | E2F6 | score:193, expCount:1, expNums:495, expScores:193, srow:1907381 |
| 34817 | chr19 | 343599 | 343962 | wgEncodeRegTfbsClusteredV3 | TEAD4 | score:269, expCount:1, expNums:240, expScores:269, srow:1907382 |
| 34817 | chr19 | 342165 | 344164 | cpgShore | — | values(x.gr)[overs$srow, ]:21964 |
- 10 featuress
Omics Overlaps
| Dmrid | Omic Set | Data | Plot |
|---|---|---|---|
| 34817 | cellmeth_recounts | PrEC: 0, LNCaP: 460, DU145: 8 |  |
| 34817 | cellmeth_diffreps_PrECvsLNCaP | A=0, B=366, Length=820, Event=Up, log2FC=Inf, padj=0 |  |
| 34817 | cellmeth_diffreps_LNCaPvsDU145 | A=391.27, B=5.61, Length=820, Event=Down, log2FC=-6.12, padj=0 |  |
| 34817 | cellexp | id=ENSG00000105556, name=MIER2, PrEC=1505, str=1822, LNCaP=1201, str=857, DU145=1269, str=1101 |  |
| 34817 | tcgaexp | gene=MIER2, entrez=54531, pos=chr19:305575-344791(-), B=1240, L=1341, M=1284, H=1176 |  |