DMR 34834 chr19:935751-935950 (200bp)
| DMR Stats | |
|---|---|
| Position | chr19:935751-935950 (View on UCSC) |
| Width | 200bp |
| Genomic Context | intron |
| Nearest Genes | ARID3A (0bp away) |
| ANODEV p-value | 0.00364263803718 |
| Frequencies | Benign: 0.0 (0.0%), Low: 5.0 (83.33%), High: 6.0 (66.67 %) |
| Frequent? |
Region Count Boxplot
Region Overview
Gene Overlaps
| Dmrid | Gene Symbol | Gene Id | Isoform Id | Isoform Chr | Isoform Start | Isoform End | Isoform Strand | Overlap Bp | Query Overlap Per | Isoform Overlap Per | Noncoding | Promoter Per | Exonintron Per | End Per |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 34834 | ARID3A | 14127 | uc002lql.3 | chr19 | 926037 | 972803 | + | 200 | 100.0 | 0.3 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (100), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0) | 0.0 |
- 1 genes
Feature Overlaps
| Dmrid | Feature Chr | Feature Start | Feature End | Set | Name | Fields |
|---|---|---|---|---|---|---|
| 34834 | chr19 | 934846 | 937595 | cpgShelf | — | values(x.gr)[overs$srow, ]:18754 |
- 1 features
Omics Overlaps
| Dmrid | Omic Set | Data | Plot |
|---|---|---|---|
| 34834 | cellmeth_recounts | PrEC: 6, LNCaP: 6, DU145: 68 |  |
| 34834 | cellmeth_diffreps_PrECvsLNCaP | A=53, B=16, Length=360, Event=Down, log2FC=-1.73, padj=0.000217925290017815 |  |
| 34834 | cellmeth_diffreps_PrECvsDU145 | A=12, B=57, Length=400, Event=Up, log2FC=2.25, padj=1.37590364676336e-06 |  |
| 34834 | cellmeth_diffreps_PrECvsDU145 | A=53, B=15, Length=360, Event=Down, log2FC=-1.82, padj=0.000126517867137522 |  |
| 34834 | cellmeth_diffreps_LNCaPvsDU145 | A=7.48, B=51.45, Length=400, Event=Up, log2FC=2.78, padj=4.02251070172748e-07 |  |
| 34834 | cellexp | id=ENSG00000116017, name=ARID3A, PrEC=1182, str=1450, LNCaP=782, str=507, DU145=1006, str=827 |  |
| 34834 | tcgaexp | gene=ARID3A, entrez=1820, pos=chr19:926037-972803(+), B=120, L=165, M=176, H=195 |  |