DMR 3494 chr6:101846851-101847450 (600bp)
| DMR Stats | |
|---|---|
| Position | chr6:101846851-101847450 (View on UCSC) |
| Width | 600bp |
| Genomic Context | promoter |
| Nearest Genes | GRIK2 (0bp away) |
| ANODEV p-value | 4.93856573414e-09 |
| Frequencies | Benign: 6.0 (85.71%), Low: 6.0 (100.0%), High: 9.0 (100.0 %) |
| Frequent? |
Region Count Boxplot
Region Overview
Gene Overlaps
| Dmrid | Gene Symbol | Gene Id | Isoform Id | Isoform Chr | Isoform Start | Isoform End | Isoform Strand | Overlap Bp | Query Overlap Per | Isoform Overlap Per | Noncoding | Promoter Per | Exonintron Per | End Per |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 3494 | GRIK2 | 24892 | uc003pqn.3 | chr6 | 101846861 | 102338007 | + | 590 | 98.33 | 0.19 | 0 | 85.0 | E1 (68), I1 (30.5), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0) | 0.0 |
| 3494 | GRIK2 | 24892 | uc003pqo.4 | chr6 | 101846861 | 102517958 | + | 590 | 98.33 | 0.11 | 0 | 85.0 | E1 (68), I1 (30.5), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0), I11 (0), E12 (0), I12 (0), E13 (0), I13 (0), E14 (0), I14 (0), E15 (0), I15 (0), E16 (0), I16 (0), E17 (0) | 0.0 |
| 3494 | GRIK2 | 24892 | uc003pqp.4 | chr6 | 101846861 | 102517958 | + | 590 | 98.33 | 0.15 | 0 | 85.0 | E1 (68), I1 (30.5), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0), I11 (0), E12 (0), I12 (0), E13 (0), I13 (0), E14 (0), I14 (0), E15 (0), I15 (0), E16 (0) | 0.0 |
| 3494 | GRIK2 | 24892 | uc010kcw.3 | chr6 | 101846861 | 102517958 | + | 590 | 98.33 | 0.16 | 0 | 85.0 | E1 (68), I1 (30.5), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0), I11 (0), E12 (0), I12 (0), E13 (0), I13 (0), E14 (0), I14 (0), E15 (0), I15 (0), E16 (0), I16 (0), E17 (0) | 0.0 |
| 3494 | GRIK2 | 24892 | uc021zdi.1 | chr6 | 101841382 | 101847268 | + | 418 | 69.67 | 0.14 | 1 | 0.0 | E1 (0), I1 (1.67), E2 (68) | 100.0 |
| 3494 | GRIK2 | 24892 | uc021zdj.1 | chr6 | 101846669 | 102193018 | + | 600 | 100.0 | 0.29 | 0 | 53.0 | E1 (69.67), I1 (30.5), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0) | 0.0 |
| 3494 | GRIK2 | 24892 | uc021zdk.1 | chr6 | 101846861 | 102517958 | + | 590 | 98.33 | 0.18 | 0 | 85.0 | E1 (68), I1 (30.5), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0), I11 (0), E12 (0), I12 (0), E13 (0), I13 (0), E14 (0) | 0.0 |
| 3494 | GRIK2 | 24892 | uc021zdl.1 | chr6 | 101846861 | 102517958 | + | 590 | 98.33 | 0.17 | 1 | 85.0 | E1 (68), I1 (30.5), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0), I11 (0), E12 (0), I12 (0), E13 (0), I13 (0), E14 (0) | 0.0 |
- 8 geness
Feature Overlaps
| Dmrid | Feature Chr | Feature Start | Feature End | Set | Name | Fields |
|---|---|---|---|---|---|---|
| 3494 | chr6 | 101846701 | 101847150 | wgEncodeRegDnaseClusteredV2 | 11 | score:220, srow:1037951 |
| 3494 | chr6 | 101846768 | 101847117 | wgEncodeRegTfbsClusteredV3 | YY1 | score:203, expCount:1, expNums:266, expScores:203, srow:3585650 |
| 3494 | chr6 | 101846788 | 101847057 | wgEncodeRegTfbsClusteredV3 | REST | score:192, expCount:1, expNums:257, expScores:192, srow:3585651 |
| 3494 | chr6 | 101846873 | 101848005 | wgEncodeRegTfbsClusteredV3 | EZH2 | score:386, expCount:1, expNums:6, expScores:368, srow:3585652 |
| 3494 | chr6 | 101846923 | 101846932 | tfbsConsSites | V$CDPCR3HD_01 | score:892, zScore:1.82, srow:4547252 |
| 3494 | chr6 | 101846962 | 101846969 | tfbsConsSites | V$E2F_02 | score:896, zScore:2.02, srow:4547253 |
| 3494 | chr6 | 101846978 | 101846992 | tfbsConsSites | V$OCT1_02 | score:861, zScore:2.18, srow:4547254 |
| 3494 | chr6 | 101846995 | 101847003 | tfbsConsSites | V$HOXA3_01 | score:928, zScore:1.84, srow:4547255 |
| 3494 | chr6 | 101847001 | 101847009 | tfbsConsSites | V$PAX2_02 | score:1000, zScore:2.35, srow:4547256 |
| 3494 | chr6 | 101847003 | 101847014 | tfbsConsSites | V$IK2_01 | score:936, zScore:1.76, srow:4547257 |
| 3494 | chr6 | 101847004 | 101847012 | tfbsConsSites | V$LYF1_01 | score:950, zScore:1.94, srow:4547258 |
| 3494 | chr6 | 101847007 | 101847014 | tfbsConsSites | V$STAT3_02 | score:996, zScore:1.87, srow:4547259 |
| 3494 | chr6 | 101847035 | 101847058 | tfbsConsSites | V$GFI1_01 | score:830, zScore:2.41, srow:4547260 |
| 3494 | chr6 | 101847102 | 101847119 | tfbsConsSites | V$AHR_01 | score:823, zScore:2.69, srow:4547261 |
| 3494 | chr6 | 101847107 | 101847127 | tfbsConsSites | V$STAT1_01 | score:774, zScore:1.97, srow:4547262 |
| 3494 | chr6 | 101847107 | 101847127 | tfbsConsSites | V$STAT3_01 | score:778, zScore:2.17, srow:4547263 |
| 3494 | chr6 | 101847115 | 101847128 | tfbsConsSites | V$P300_01 | score:842, zScore:1.68, srow:4547264 |
| 3494 | chr6 | 101847116 | 101847125 | tfbsConsSites | V$NCX_01 | score:888, zScore:2.15, srow:4547265 |
| 3494 | chr6 | 101847116 | 101847131 | tfbsConsSites | V$AHRARNT_01 | score:862, zScore:2.29, srow:4547266 |
| 3494 | chr6 | 101847119 | 101847128 | tfbsConsSites | V$HMX1_01 | score:840, zScore:2.18, srow:4547267 |
| 3494 | chr6 | 101847123 | 101847134 | tfbsConsSites | V$CREB_02 | score:860, zScore:1.84, srow:4547268 |
| 3494 | chr6 | 101847173 | 101847184 | tfbsConsSites | V$NKX3A_01 | score:862, zScore:1.82, srow:4547269 |
| 3494 | chr6 | 101847227 | 101847241 | tfbsConsSites | V$OCT1_02 | score:843, zScore:1.88, srow:4547270 |
| 3494 | chr6 | 101847247 | 101847252 | tfbsConsSites | V$AML1_01 | score:1000, zScore:1.78, srow:4547271 |
| 3494 | chr6 | 101847262 | 101847277 | tfbsConsSites | V$EVI1_01 | score:750, zScore:1.79, srow:4547272 |
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Omics Overlaps
| Dmrid | Omic Set | Data | Plot |
|---|---|---|---|
| 3494 | cellmeth_recounts | PrEC: 60, LNCaP: 43, DU145: 12 |  |
| 3494 | cellmeth_diffreps_PrECvsLNCaP | A=132, B=48, Length=580, Event=Down, log2FC=-1.46, padj=1.34025997183773e-08 |  |
| 3494 | cellmeth_diffreps_PrECvsDU145 | A=205, B=11, Length=1260, Event=Down, log2FC=-4.22, padj=0 |  |
| 3494 | cellmeth_diffreps_LNCaPvsDU145 | A=27.8, B=2.81, Length=340, Event=Down, log2FC=-3.31, padj=0.00022032211023937 |  |
| 3494 | cellmeth_diffreps_LNCaPvsDU145 | A=48.11, B=5.61, Length=420, Event=Down, log2FC=-3.1, padj=1.77963117819496e-07 |  |
| 3494 | cellexp | id=ENSG00000164418, name=GRIK2, PrEC=6, str=188, LNCaP=99, str=167, DU145=3, str=0 |  |
| 3494 | tcgameth | site:cg10591607, B=0.51, L=0.67, H=0.63 |  |
| 3494 | tcgameth | site:cg14082127, B=0.58, L=0.71, H=0.66 |  |
| 3494 | tcgameth | site:cg18193094, B=0.46, L=0.66, H=0.61 |  |
| 3494 | tcgameth | site:cg21635870, B=0.54, L=0.73, H=0.67 |  |
| 3494 | tcgameth | site:cg22851944, B=0.63, L=0.73, H=0.64 |  |
| 3494 | tcgameth | site:cg24301620, B=0.62, L=0.75, H=0.72 |  |
| 3494 | tcgameth | site:cg26316946, B=0.51, L=0.66, H=0.63 |  |
| 3494 | tcgameth | site:cg27074174, B=0.56, L=0.71, H=0.65 |  |
| 3494 | tcgaexp | gene=GRIK2, entrez=2898, pos=chr6:101846669-102517958(+), B=138, L=85, M=76, H=81 |  |