DMR 34956 chr19:8808651-8808800 (150bp)

DMR Stats
Positionchr19:8808651-8808800 (View on UCSC)
Width150bp
Genomic Contextpromoter
Nearest GenesACTL9 (0bp away)
ANODEV p-value0.00339402839902
FrequenciesBenign: 2.0 (28.57%), Low: 6.0 (100.0%), High: 9.0 (100.0 %)
Frequent?

Region Count Boxplot

Region Overview

Gene Overlaps

Dmrid Gene Symbol Gene Id Isoform Id Isoform Chr Isoform Start Isoform End Isoform Strand Overlap Bp Query Overlap Per Isoform Overlap Per Noncoding Promoter Per Exonintron Per End Per
34956 ACTL9 14389 uc002mkl.2 chr19 8807751 8809172 - 150 100.0 0.21 0 85.33 E1 (100) 66.67
  • 1 genes

Feature Overlaps

Dmrid Feature Chr Feature Start Feature End Set Name Fields
34956 chr19 8808421 8808955 wgEncodeRegDnaseClusteredV2 26 score:533, srow:563195
34956 chr19 8808329 8808824 wgEncodeRegTfbsClusteredV3 HMGN3 score:123, expCount:1, expNums:501, expScores:123, srow:1948262
34956 chr19 8808433 8808821 wgEncodeRegTfbsClusteredV3 CTCF score:1000, expCount:43, expNums:0,5,12,20,24,137,174,213,262,493,595,597,598,603,604,605,606,609,612,621,627,628,629,630,631,635,636,638,648,651,659,661,662,663,665,666,667,677,679,680,681,687,688, expScores:1000,654,135,122,634,342,209,339,168,525,714,527,1000,248,226,131,148,646,305,647,616,824,815,704,551,160,183,197,230,128,130,174,392,354,204,175,190,140,463,135,508,451,709, srow:1948263
34956 chr19 8808502 8808931 wgEncodeRegTfbsClusteredV3 E2F6 score:329, expCount:2, expNums:215,495, expScores:329,169, srow:1948264
34956 chr19 8808510 8808799 wgEncodeRegTfbsClusteredV3 ZNF143 score:239, expCount:1, expNums:361, expScores:239, srow:1948265
34956 chr19 8808522 8808791 wgEncodeRegTfbsClusteredV3 SMC3 score:155, expCount:1, expNums:535, expScores:155, srow:1948266
34956 chr19 8808529 8808884 wgEncodeRegTfbsClusteredV3 MAX score:449, expCount:2, expNums:223,511, expScores:449,230, srow:1948267
34956 chr19 8808533 8808776 wgEncodeRegTfbsClusteredV3 RAD21 score:1000, expCount:5, expNums:149,193,231,264,355, expScores:1000,372,254,192,585, srow:1948268
34956 chr19 8808570 8808715 wgEncodeRegTfbsClusteredV3 ZBTB7A score:259, expCount:1, expNums:247, expScores:259, srow:1948269
34956 chr19 8808574 8808743 wgEncodeRegTfbsClusteredV3 CTCFL score:144, expCount:1, expNums:214, expScores:144, srow:1948270
34956 chr19 8808599 8808914 wgEncodeRegTfbsClusteredV3 MYC score:183, expCount:1, expNums:575, expScores:183, srow:1948271
34956 chr19 8808639 8809088 wgEncodeRegTfbsClusteredV3 POLR2A score:161, expCount:1, expNums:577, expScores:161, srow:1948272
34956 chr19 8808800 8808810 tfbsConsSites V$CP2_01 score:879, zScore:1.73, srow:2426343
34956 chr19 8808680 8808680 cosmic COSM568935 srow:560205
34956 chr19 8808697 8808697 cosmic COSM180108 srow:560206
34956 chr19 8808746 8808746 cosmic COSM1527431 srow:560207
34956 chr19 8808755 8808755 cosmic COSM418702 srow:560208
34956 chr19 8808786 8808786 cosmic COSM1181724 srow:560209
34956 chr19 8808794 8808794 cosmic COSM715592 srow:560210
34956 chr19 8808795 8808795 cosmic COSM227633 srow:560211
34956 chr19 8808642 8808670 phastConsElements100way lod=210 score:523, srow:4162534
34956 chr19 8808672 8808676 phastConsElements100way lod=34 score:343, srow:4162535
34956 chr19 8808678 8808679 phastConsElements100way lod=17 score:274, srow:4162536
34956 chr19 8808681 8808682 phastConsElements100way lod=15 score:262, srow:4162537
34956 chr19 8808684 8808696 phastConsElements100way lod=139 score:482, srow:4162538
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  • 25 of 36 featuress

Omics Overlaps

Dmrid Omic Set Data Plot
34956 cellmeth_recounts PrEC: 10, LNCaP: 0, DU145: 10
34956 cellmeth_diffreps_PrECvsLNCaP A=290, B=0, Length=1180, Event=Down, log2FC=-Inf, padj=0
34956 cellmeth_diffreps_PrECvsDU145 A=283, B=51, Length=940, Event=Down, log2FC=-2.47, padj=0
34956 cellmeth_diffreps_LNCaPvsDU145 A=0, B=23.39, Length=440, Event=Up, log2FC=Inf, padj=3.41152748077669e-06
34956 cellexp id=ENSG00000181786, name=ACTL9, PrEC=0, str=0, LNCaP=0, str=0, DU145=0, str=0
34956 tcgameth site:cg02825211, B=0.12, L=0.28, H=0.22
34956 tcgaexp gene=ACTL9, entrez=284382, pos=chr19:8807751-8809172(-), B=0, L=0, M=0, H=0