DMR 34986 chr19:12624201-12624700 (500bp)
| DMR Stats | |
|---|---|
| Position | chr19:12624201-12624700 (View on UCSC) |
| Width | 500bp |
| Genomic Context | promoter |
| Nearest Genes | ZNF709 (0bp away) |
| ANODEV p-value | 0.00423386901491 |
| Frequencies | Benign: 0.0 (0.0%), Low: 5.0 (83.33%), High: 7.0 (77.78 %) |
| Frequent? |
Region Count Boxplot
Region Overview
Gene Overlaps
| Dmrid | Gene Symbol | Gene Id | Isoform Id | Isoform Chr | Isoform Start | Isoform End | Isoform Strand | Overlap Bp | Query Overlap Per | Isoform Overlap Per | Noncoding | Promoter Per | Exonintron Per | End Per |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 34986 | ZNF709 | 14518 | uc002mtw.4 | chr19 | 12571998 | 12624647 | - | 447 | 89.4 | 0.07 | 0 | 100.0 | E1 (18), I1 (71.4), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0) | 0.0 |
| 34986 | ZNF709 | 14518 | uc002mtx.4 | chr19 | 12571998 | 12662356 | - | 500 | 100.0 | 0.05 | 0 | 0.0 | E1 (0), I1 (100), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0) | 0.0 |
- 2 geness
Feature Overlaps
| Dmrid | Feature Chr | Feature Start | Feature End | Set | Name | Fields |
|---|---|---|---|---|---|---|
| 34986 | chr19 | 12623986 | 12624835 | wgEncodeRegDnaseClusteredV2 | 30 | score:533, srow:565459 |
| 34986 | chr19 | 12624454 | 12624738 | wgEncodeRegTfbsClusteredV3 | CTCF | score:1000, expCount:7, expNums:5,137,174,213,609,659,687, expScores:492,1000,351,584,397,144,124, srow:1960824 |
| 34986 | chr19 | 12624479 | 12624718 | wgEncodeRegTfbsClusteredV3 | RAD21 | score:195, expCount:1, expNums:149, expScores:195, srow:1960825 |
| 34986 | chr19 | 12624625 | 12624948 | wgEncodeRegTfbsClusteredV3 | SP1 | score:144, expCount:1, expNums:153, expScores:144, srow:1960826 |
| 34986 | chr19 | 12624274 | 12624477 | cpgIsland | CpG: 26 | length:204, cpgNum:26, gcNum:150, perCpg:25.5, perGc:73.5, obsExp:0.94, srow:12996 |
| 34986 | chr19 | 12622274 | 12624273 | cpgShore | — | values(x.gr)[overs$srow, ]:23467 |
| 34986 | chr19 | 12624478 | 12626477 | cpgShore | — | values(x.gr)[overs$srow, ]:23468 |
- 7 featuress
Omics Overlaps
| Dmrid | Omic Set | Data | Plot |
|---|---|---|---|
| 34986 | cellmeth_recounts | PrEC: 23, LNCaP: 4, DU145: 26 |  |
| 34986 | cellmeth_diffreps_PrECvsLNCaP | A=30, B=3, Length=360, Event=Down, log2FC=-3.32, padj=2.19579714294232e-05 |  |
| 34986 | cellmeth_diffreps_PrECvsDU145 | A=0, B=17, Length=220, Event=Up, log2FC=Inf, padj=7.41301388411866e-05 |  |
| 34986 | cellmeth_diffreps_PrECvsDU145 | A=30, B=6, Length=200, Event=Down, log2FC=-2.32, padj=0.00125490492259022 |  |
| 34986 | cellexp | id=ENSG00000196826, name=ZNF709, PrEC=0, str=0, LNCaP=0, str=0, DU145=0, str=0 |  |
| 34986 | cellexp | id=ENSG00000242852, name=ZNF709, PrEC=3, str=18, LNCaP=12, str=10, DU145=3, str=8 |  |
| 34986 | tcgameth | site:cg08204783, B=0.44, L=0.6, H=0.63 |  |
| 34986 | tcgameth | site:cg08411068, B=0.26, L=0.43, H=0.48 |  |
| 34986 | tcgameth | site:cg21298174, B=0.41, L=0.62, H=0.63 |  |
| 34986 | tcgameth | site:cg22637867, B=0.37, L=0.63, H=0.65 |  |
| 34986 | tcgaexp | gene=ZNF709, entrez=163051, pos=chr19:12571998-12662356(-), B=386, L=328, M=337, H=338 |  |