DMR 35183 chr19:39191251-39191400 (150bp)
| DMR Stats | |
|---|---|
| Position | chr19:39191251-39191400 (View on UCSC) |
| Width | 150bp |
| Genomic Context | exon |
| Nearest Genes | ACTN4 (0bp away) |
| ANODEV p-value | 1.67692219728e-07 |
| Frequencies | Benign: 0.0 (0.0%), Low: 6.0 (100.0%), High: 9.0 (100.0 %) |
| Frequent? |
Region Count Boxplot
Region Overview
Gene Overlaps
| Dmrid | Gene Symbol | Gene Id | Isoform Id | Isoform Chr | Isoform Start | Isoform End | Isoform Strand | Overlap Bp | Query Overlap Per | Isoform Overlap Per | Noncoding | Promoter Per | Exonintron Per | End Per |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 35183 | ACTN4 | 15095 | uc002oja.2 | chr19 | 39138267 | 39221171 | + | 150 | 100.0 | 0.05 | 0 | 0.0 | E1 (0), I1 (0), E2 (69.33), I2 (31.33), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0), I11 (0), E12 (0), I12 (0), E13 (0), I13 (0), E14 (0), I14 (0), E15 (0), I15 (0), E16 (0), I16 (0), E17 (0), I17 (0), E18 (0), I18 (0), E19 (0), I19 (0), E20 (0), I20 (0), E21 (0) | 0.0 |
| 35183 | ACTN4 | 15095 | uc010egc.2 | chr19 | 39138267 | 39212518 | + | 150 | 100.0 | 0.05 | 0 | 0.0 | E1 (0), I1 (0), E2 (69.33), I2 (31.33), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0), I11 (0), E12 (0) | 0.0 |
| 35183 | ACTN4 | 15095 | uc021uug.1 | chr19 | 39138267 | 39221171 | + | 150 | 100.0 | 0.12 | 0 | 0.0 | E1 (0), I1 (100), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0), I11 (0), E12 (0), I12 (0), E13 (0), I13 (0), E14 (0) | 0.0 |
- 3 geness
Feature Overlaps
| Dmrid | Feature Chr | Feature Start | Feature End | Set | Name | Fields |
|---|---|---|---|---|---|---|
| 35183 | chr19 | 39191161 | 39191430 | wgEncodeRegDnaseClusteredV2 | 3 | score:322, srow:578801 |
| 35183 | chr19 | 39191265 | 39191368 | wgEncodeRegTfbsClusteredV3 | POLR2A | score:337, expCount:1, expNums:62, expScores:337, srow:2015864 |
| 35183 | chr19 | 39191389 | 39191778 | wgEncodeRegTfbsClusteredV3 | MAZ | score:149, expCount:1, expNums:440, expScores:149, srow:2015865 |
| 35183 | chr19 | 39191240 | 39191263 | tfbsConsSites | V$BRACH_01 | score:715, zScore:2.42, srow:2477092 |
| 35183 | chr19 | 39191249 | 39191262 | tfbsConsSites | V$CEBPB_02 | score:852, zScore:1.76, srow:2477093 |
| 35183 | chr19 | 39191251 | 39191260 | tfbsConsSites | V$HLF_01 | score:876, zScore:1.87, srow:2477094 |
| 35183 | chr19 | 39191252 | 39191264 | tfbsConsSites | V$CHOP_01 | score:873, zScore:2.62, srow:2477095 |
| 35183 | chr19 | 39191294 | 39191308 | tfbsConsSites | V$CDP_02 | score:822, zScore:1.82, srow:2477096 |
| 35183 | chr19 | 39191303 | 39191323 | tfbsConsSites | V$STAT3_01 | score:765, zScore:1.95, srow:2477097 |
| 35183 | chr19 | 39191337 | 39191349 | tfbsConsSites | V$RORA1_01 | score:871, zScore:1.76, srow:2477098 |
| 35183 | chr19 | 39191270 | 39191270 | cosmic | COSM996121 | srow:594100 |
| 35183 | chr19 | 39191317 | 39191317 | cosmic | COSM1393443 | srow:594101 |
| 35183 | chr19 | 39191330 | 39191330 | cosmic | COSM343510 | srow:594102 |
| 35183 | chr19 | 39191252 | 39191277 | phastConsElements100way | lod=311 | score:562, srow:4275983 |
| 35183 | chr19 | 39191279 | 39191283 | phastConsElements100way | lod=65 | score:407, srow:4275984 |
| 35183 | chr19 | 39191285 | 39191289 | phastConsElements100way | lod=75 | score:421, srow:4275985 |
| 35183 | chr19 | 39191291 | 39191298 | phastConsElements100way | lod=118 | score:466, srow:4275986 |
| 35183 | chr19 | 39191300 | 39191301 | phastConsElements100way | lod=39 | score:356, srow:4275987 |
| 35183 | chr19 | 39191303 | 39191313 | phastConsElements100way | lod=132 | score:477, srow:4275988 |
| 35183 | chr19 | 39191315 | 39191316 | phastConsElements100way | lod=36 | score:348, srow:4275989 |
| 35183 | chr19 | 39191318 | 39191319 | phastConsElements100way | lod=45 | score:370, srow:4275990 |
| 35183 | chr19 | 39191321 | 39191322 | phastConsElements100way | lod=30 | score:330, srow:4275991 |
| 35183 | chr19 | 39191324 | 39191334 | phastConsElements100way | lod=142 | score:484, srow:4275992 |
| 35183 | chr19 | 39191336 | 39191359 | phastConsElements100way | lod=267 | score:547, srow:4275993 |
- 24 featuress
Omics Overlaps
| Dmrid | Omic Set | Data | Plot |
|---|---|---|---|
| 35183 | cellmeth_recounts | PrEC: 9, LNCaP: 10, DU145: 1 |  |
| 35183 | cellmeth_diffreps_PrECvsLNCaP | A=100, B=14, Length=460, Event=Down, log2FC=-2.84, padj=0 |  |
| 35183 | cellmeth_diffreps_PrECvsDU145 | A=100, B=13, Length=440, Event=Down, log2FC=-2.94, padj=0 |  |
| 35183 | cellexp | id=ENSG00000130402, name=ACTN4, PrEC=75704, str=45260, LNCaP=20446, str=17772, DU145=66546, str=73690 |  |
| 35183 | tcgaexp | gene=ACTN4, entrez=81, pos=chr19:39138267-39221171(+), B=27414, L=20994, M=19698, H=21385 |  |