DMR 35185 chr19:39208551-39208750 (200bp)
| DMR Stats | |
|---|---|
| Position | chr19:39208551-39208750 (View on UCSC) |
| Width | 200bp |
| Genomic Context | exon |
| Nearest Genes | ACTN4 (0bp away) |
| ANODEV p-value | 0.000228207869664 |
| Frequencies | Benign: 2.0 (28.57%), Low: 5.0 (83.33%), High: 9.0 (100.0 %) |
| Frequent? |
Region Count Boxplot
Region Overview
Gene Overlaps
| Dmrid | Gene Symbol | Gene Id | Isoform Id | Isoform Chr | Isoform Start | Isoform End | Isoform Strand | Overlap Bp | Query Overlap Per | Isoform Overlap Per | Noncoding | Promoter Per | Exonintron Per | End Per |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 35185 | ACTN4 | 15095 | uc002oja.2 | chr19 | 39138267 | 39221171 | + | 200 | 100.0 | 0.04 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (8), E11 (74), I11 (18.5), E12 (0), I12 (0), E13 (0), I13 (0), E14 (0), I14 (0), E15 (0), I15 (0), E16 (0), I16 (0), E17 (0), I17 (0), E18 (0), I18 (0), E19 (0), I19 (0), E20 (0), I20 (0), E21 (0) | 0.0 |
| 35185 | ACTN4 | 15095 | uc010egc.2 | chr19 | 39138267 | 39212518 | + | 200 | 100.0 | 0.05 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (8), E11 (74), I11 (18.5), E12 (0) | 0.0 |
| 35185 | ACTN4 | 15095 | uc021uug.1 | chr19 | 39138267 | 39221171 | + | 200 | 100.0 | 0.04 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (8), E4 (74), I4 (18.5), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0), I11 (0), E12 (0), I12 (0), E13 (0), I13 (0), E14 (0) | 0.0 |
- 3 geness
Feature Overlaps
| Dmrid | Feature Chr | Feature Start | Feature End | Set | Name | Fields |
|---|---|---|---|---|---|---|
| 35185 | chr19 | 39208366 | 39208695 | wgEncodeRegDnaseClusteredV2 | 3 | score:356, srow:578825 |
| 35185 | chr19 | 39208364 | 39208793 | wgEncodeRegTfbsClusteredV3 | POLR2A | score:356, expCount:2, expNums:61,62, expScores:276,356, srow:2015950 |
| 35185 | chr19 | 39208568 | 39208579 | tfbsConsSites | V$HFH1_01 | score:880, zScore:2.01, srow:2477182 |
| 35185 | chr19 | 39208569 | 39208582 | tfbsConsSites | V$SOX9_B1 | score:892, zScore:2.3, srow:2477183 |
| 35185 | chr19 | 39208571 | 39208580 | tfbsConsSites | V$SOX5_01 | score:977, zScore:2.54, srow:2477184 |
| 35185 | chr19 | 39208598 | 39208611 | tfbsConsSites | V$GATA1_03 | score:883, zScore:2.41, srow:2477185 |
| 35185 | chr19 | 39208655 | 39208668 | tfbsConsSites | V$MEIS1AHOXA9_01 | score:789, zScore:1.73, srow:2477186 |
| 35185 | chr19 | 39208655 | 39208670 | tfbsConsSites | V$TAL1ALPHAE47_01 | score:867, zScore:1.79, srow:2477187 |
| 35185 | chr19 | 39208656 | 39208669 | tfbsConsSites | V$MYCMAX_01 | score:825, zScore:2.14, srow:2477188 |
| 35185 | chr19 | 39208656 | 39208669 | tfbsConsSites | V$USF_02 | score:917, zScore:1.9, srow:2477189 |
| 35185 | chr19 | 39208657 | 39208667 | tfbsConsSites | V$SREBP1_01 | score:851, zScore:1.7, srow:2477190 |
| 35185 | chr19 | 39208660 | 39208683 | tfbsConsSites | V$STAT5A_02 | score:774, zScore:2.2, srow:2477191 |
| 35185 | chr19 | 39208669 | 39208689 | tfbsConsSites | V$STAT1_01 | score:759, zScore:1.73, srow:2477192 |
| 35185 | chr19 | 39208671 | 39208684 | tfbsConsSites | V$ELK1_02 | score:875, zScore:1.87, srow:2477193 |
| 35185 | chr19 | 39208577 | 39208577 | cosmic | COSM1612194 | srow:594130 |
| 35185 | chr19 | 39208607 | 39208607 | cosmic | COSM399372 | srow:594131 |
| 35185 | chr19 | 39208565 | 39208577 | phastConsElements100way | lod=121 | score:468, srow:4276141 |
| 35185 | chr19 | 39208579 | 39208601 | phastConsElements100way | lod=203 | score:519, srow:4276142 |
| 35185 | chr19 | 39208603 | 39208613 | phastConsElements100way | lod=162 | score:497, srow:4276143 |
| 35185 | chr19 | 39208615 | 39208631 | phastConsElements100way | lod=213 | score:524, srow:4276144 |
| 35185 | chr19 | 39208633 | 39208640 | phastConsElements100way | lod=100 | score:449, srow:4276145 |
| 35185 | chr19 | 39208643 | 39208655 | phastConsElements100way | lod=145 | score:486, srow:4276146 |
| 35185 | chr19 | 39208657 | 39208667 | phastConsElements100way | lod=137 | score:481, srow:4276147 |
| 35185 | chr19 | 39208669 | 39208688 | phastConsElements100way | lod=259 | score:544, srow:4276148 |
| 35185 | chr19 | 39208690 | 39208697 | phastConsElements100way | lod=76 | score:422, srow:4276149 |
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Omics Overlaps
| Dmrid | Omic Set | Data | Plot |
|---|---|---|---|
| 35185 | cellmeth_recounts | PrEC: 39, LNCaP: 5, DU145: 1 |  |
| 35185 | cellmeth_diffreps_PrECvsLNCaP | A=173, B=17, Length=1200, Event=Down, log2FC=-3.35, padj=0 |  |
| 35185 | cellmeth_diffreps_PrECvsDU145 | A=173, B=7, Length=1200, Event=Down, log2FC=-4.63, padj=0 |  |
| 35185 | cellexp | id=ENSG00000130402, name=ACTN4, PrEC=75704, str=45260, LNCaP=20446, str=17772, DU145=66546, str=73690 |  |
| 35185 | tcgaexp | gene=ACTN4, entrez=81, pos=chr19:39138267-39221171(+), B=27414, L=20994, M=19698, H=21385 |  |