DMR 35359 chr19:53038401-53040150 (1750bp)

DMR Stats
Positionchr19:53038401-53040150 (View on UCSC)
Width1750bp
Genomic Contextintron
Nearest GenesZNF808 (0bp away)
ANODEV p-value3.73753592702e-08
FrequenciesBenign: 0.0 (0.0%), Low: 4.0 (66.67%), High: 5.0 (55.56 %)
Frequent?

Region Count Boxplot

Region Overview

Gene Overlaps

Dmrid Gene Symbol Gene Id Isoform Id Isoform Chr Isoform Start Isoform End Isoform Strand Overlap Bp Query Overlap Per Isoform Overlap Per Noncoding Promoter Per Exonintron Per End Per
35359 ZNF808 15668 uc002pzq.2 chr19 53030909 53067717 + 1750 100.0 0.38 1 0.0 E1 (0), I1 (100), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0) 0.0
35359 ZNF808 15668 uc010epq.1 chr19 53030909 53059303 + 1750 100.0 0.14 0 0.0 E1 (0), I1 (0), E2 (0), I2 (100), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0) 0.0
  • 2 geness

Feature Overlaps

Dmrid Feature Chr Feature Start Feature End Set Name Fields
35359 chr19 53038761 53038970 wgEncodeRegDnaseClusteredV2 5 score:127, srow:589089
35359 chr19 53039026 53039330 wgEncodeRegDnaseClusteredV2 98 score:1000, srow:589090
35359 chr19 53039341 53039710 wgEncodeRegDnaseClusteredV2 56 score:532, srow:589091
35359 chr19 53039721 53040035 wgEncodeRegDnaseClusteredV2 11 score:218, srow:589092
35359 chr19 53038957 53039305 wgEncodeRegTfbsClusteredV3 CTCF score:378, expCount:16, expNums:463,639,640,641,642,644,646,656,659,660,662,671,674,675,676,678, expScores:122,122,115,104,189,239,378,92,170,160,312,104,149,151,136,201, srow:2071453
35359 chr19 53038998 53039433 wgEncodeRegTfbsClusteredV3 MAZ score:314, expCount:1, expNums:297, expScores:314, srow:2071454
35359 chr19 53039000 53039980 wgEncodeRegTfbsClusteredV3 POLR2A score:1000, expCount:30, expNums:104,105,123,124,130,131,146,147,259,283,306,307,308,326,328,330,332,334,336,338,340,564,583,585,599,602,619,632,633,634, expScores:728,1000,350,545,576,726,370,326,241,208,369,160,277,911,1000,739,674,588,1000,963,868,323,605,589,121,177,170,408,503,253, srow:2071455
35359 chr19 53039037 53039634 wgEncodeRegTfbsClusteredV3 SIN3A score:304, expCount:2, expNums:312,357, expScores:304,229, srow:2071456
35359 chr19 53039077 53039408 wgEncodeRegTfbsClusteredV3 MYC score:240, expCount:2, expNums:560,626, expScores:237,240, srow:2071457
35359 chr19 53039087 53039522 wgEncodeRegTfbsClusteredV3 MAX score:217, expCount:1, expNums:296, expScores:217, srow:2071458
35359 chr19 53039100 53039455 wgEncodeRegTfbsClusteredV3 TAF7 score:150, expCount:1, expNums:158, expScores:150, srow:2071459
35359 chr19 53039117 53039510 wgEncodeRegTfbsClusteredV3 TAF1 score:361, expCount:3, expNums:115,132,157, expScores:293,130,361, srow:2071460
35359 chr19 53039118 53039447 wgEncodeRegTfbsClusteredV3 REST score:184, expCount:1, expNums:98, expScores:184, srow:2071461
35359 chr19 53039118 53039437 wgEncodeRegTfbsClusteredV3 SP1 score:257, expCount:1, expNums:112, expScores:257, srow:2071462
35359 chr19 53039123 53039402 wgEncodeRegTfbsClusteredV3 PAX5 score:123, expCount:1, expNums:129, expScores:123, srow:2071463
35359 chr19 53039123 53039442 wgEncodeRegTfbsClusteredV3 POU2F2 score:221, expCount:1, expNums:106, expScores:221, srow:2071464
35359 chr19 53039134 53039290 wgEncodeRegTfbsClusteredV3 E2F4 score:406, expCount:1, expNums:562, expScores:406, srow:2071465
35359 chr19 53039137 53039493 wgEncodeRegTfbsClusteredV3 PML score:386, expCount:1, expNums:103, expScores:386, srow:2071466
35359 chr19 53039145 53039580 wgEncodeRegTfbsClusteredV3 MXI1 score:436, expCount:1, expNums:298, expScores:436, srow:2071467
35359 chr19 53039182 53039551 wgEncodeRegTfbsClusteredV3 RELA score:175, expCount:1, expNums:325, expScores:175, srow:2071468
35359 chr19 53039198 53039598 wgEncodeRegTfbsClusteredV3 ELF1 score:884, expCount:1, expNums:88, expScores:884, srow:2071469
35359 chr19 53039258 53039726 wgEncodeRegTfbsClusteredV3 E2F1 score:992, expCount:1, expNums:572, expScores:529, srow:2071470
35359 chr19 53039352 53039731 wgEncodeRegTfbsClusteredV3 TBP score:210, expCount:1, expNums:317, expScores:210, srow:2071471
35359 chr19 53039365 53039640 wgEncodeRegTfbsClusteredV3 SPI1 score:166, expCount:2, expNums:107,126, expScores:166,163, srow:2071472
35359 chr19 53039460 53039779 wgEncodeRegTfbsClusteredV3 E2F4 score:308, expCount:2, expNums:291,562, expScores:308,195, srow:2071473
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  • 25 of 28 featuress

Omics Overlaps

Dmrid Omic Set Data Plot
35359 cellmeth_recounts PrEC: 6, LNCaP: 66, DU145: 63
35359 cellmeth_diffreps_PrECvsLNCaP A=0, B=24, Length=360, Event=Up, log2FC=Inf, padj=5.28495671886566e-07
35359 cellmeth_diffreps_PrECvsDU145 A=2, B=28, Length=360, Event=Up, log2FC=3.81, padj=1.54927579361055e-05
35359 cellmeth_diffreps_PrECvsDU145 A=3, B=24, Length=280, Event=Up, log2FC=3, padj=0.000766244946014532
35359 cellmeth_diffreps_LNCaPvsDU145 A=26.73, B=0.94, Length=380, Event=Down, log2FC=-4.84, padj=1.02048325298619e-05
35359 cellexp id=ENSG00000198482, name=ZNF808, PrEC=330, str=323, LNCaP=385, str=428, DU145=217, str=251
35359 tcgameth site:cg10583893, B=0.25, L=0.52, H=0.51
35359 tcgameth site:cg20618441, B=0.28, L=0.56, H=0.56
35359 tcgameth site:cg22455450, B=0.3, L=0.68, H=0.66
35359 tcgaexp gene=ZNF808, entrez=388558, pos=chr19:53030909-53067717(+), B=569, L=472, M=502, H=515