DMR 35380 chr19:55591901-55594050 (2150bp)
| DMR Stats | |
|---|---|
| Position | chr19:55591901-55594050 (View on UCSC) |
| Width | 2150bp |
| Genomic Context | promoter |
| Nearest Genes | EPS8L1 (0bp away) |
| ANODEV p-value | 0.00117276350776 |
| Frequencies | Benign: 1.0 (14.29%), Low: 5.0 (83.33%), High: 7.0 (77.78 %) |
| Frequent? |
Region Count Boxplot
Region Overview
Gene Overlaps
| Dmrid | Gene Symbol | Gene Id | Isoform Id | Isoform Chr | Isoform Start | Isoform End | Isoform Strand | Overlap Bp | Query Overlap Per | Isoform Overlap Per | Noncoding | Promoter Per | Exonintron Per | End Per |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 35380 | EPS8L1 | 15799 | uc002qis.4 | chr19 | 55587221 | 55599291 | + | 2150 | 100.0 | 0.14 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (11.12), E7 (3.86), I7 (17.53), E8 (12.19), I8 (13.07), E9 (5.91), I9 (8.98), E10 (4.14), I10 (4.42), E11 (3.49), I11 (4.88), E12 (6.93), I12 (3.77), E13 (0), I13 (0), E14 (0), I14 (0), E15 (0), I15 (0), E16 (0), I16 (0), E17 (0), I17 (0), E18 (0), I18 (0), E19 (0), I19 (0), E20 (0) | 0.0 |
| 35380 | EPS8L1 | 15799 | uc002qiu.3 | chr19 | 55591760 | 55599291 | + | 2150 | 100.0 | 0.42 | 0 | 16.7 | E1 (0.42), I1 (10.74), E2 (3.86), I2 (17.53), E3 (12.19), I3 (13.07), E4 (5.91), I4 (8.98), E5 (4.14), I5 (4.42), E6 (3.49), I6 (4.88), E7 (6.93), I7 (3.77), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0), I11 (0), E12 (0), I12 (0), E13 (0), I13 (0), E14 (0), I14 (0), E15 (0) | 0.0 |
| 35380 | EPS8L1 | 15799 | uc002qiv.3 | chr19 | 55593061 | 55599291 | + | 990 | 46.05 | 0.17 | 0 | 69.77 | E1 (9.63), I1 (8.98), E2 (12), I2 (4.88), E3 (6.93), I3 (3.77), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0) | 0.0 |
| 35380 | EPS8L1 | 15799 | uc002qiw.3 | chr19 | 55593306 | 55599291 | + | 745 | 34.65 | 0.68 | 0 | 69.77 | E1 (11.3), I1 (4.42), E2 (3.49), I2 (4.88), E3 (6.93), I3 (3.77), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0) | 0.0 |
| 35380 | EPS8L1 | 15799 | uc010ess.1 | chr19 | 55583388 | 55597560 | + | 2150 | 100.0 | 0.58 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (11.12), E4 (3.86), I4 (17.53), E5 (12.19), I5 (13.07), E6 (5.91), I6 (8.98), E7 (4.14), I7 (4.42), E8 (3.49), I8 (4.88), E9 (6.93), I9 (3.77), E10 (0), I10 (0), E11 (0), I11 (0), E12 (0) | 0.0 |
| 35380 | EPS8L1 | 15799 | uc010est.1 | chr19 | 55587221 | 55596010 | + | 2150 | 100.0 | 0.31 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (11.12), E7 (3.86), I7 (17.53), E8 (12.19), I8 (13.07), E9 (5.91), I9 (8.98), E10 (4.14), I10 (4.42), E11 (3.49), I11 (4.88), E12 (6.93), I12 (3.77), E13 (0), I13 (0), E14 (0), I14 (0), E15 (0) | 0.0 |
| 35380 | EPS8L1 | 15799 | uc010esu.1 | chr19 | 55587724 | 55597341 | + | 2150 | 100.0 | 0.19 | 1 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (11.12), E5 (3.86), I5 (17.53), E6 (12.19), I6 (13.07), E7 (5.91), I7 (8.98), E8 (4.14), I8 (4.42), E9 (3.49), I9 (4.88), E10 (6.93), I10 (3.77), E11 (0), I11 (0), E12 (0), I12 (0), E13 (0), I13 (0), E14 (0) | 0.0 |
| 35380 | EPS8L1 | 15799 | uc010yfr.2 | chr19 | 55587221 | 55599291 | + | 2150 | 100.0 | 0.46 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (11.12), E5 (3.86), I5 (17.53), E6 (12.19), I6 (13.07), E7 (5.91), I7 (8.98), E8 (4.14), I8 (4.42), E9 (3.49), I9 (4.88), E10 (6.93), I10 (3.77), E11 (0), I11 (0), E12 (0), I12 (0), E13 (0), I13 (0), E14 (0), I14 (0), E15 (0), I15 (0), E16 (0), I16 (0), E17 (0), I17 (0), E18 (0) | 0.0 |
- 8 geness
Feature Overlaps
| Dmrid | Feature Chr | Feature Start | Feature End | Set | Name | Fields |
|---|---|---|---|---|---|---|
| 35380 | chr19 | 55591961 | 55592755 | wgEncodeRegDnaseClusteredV2 | 65 | score:1000, srow:590634 |
| 35380 | chr19 | 55592801 | 55593095 | wgEncodeRegDnaseClusteredV2 | 106 | score:1000, srow:590635 |
| 35380 | chr19 | 55593226 | 55594335 | wgEncodeRegDnaseClusteredV2 | 97 | score:1000, srow:590636 |
| 35380 | chr19 | 55590825 | 55593396 | wgEncodeRegTfbsClusteredV3 | POLR2A | score:944, expCount:34, expNums:32,61,62,78,105,146,147,163,168,191,192,228,229,275,328,330,334,336,338,362,402,520,521,522,523,524,525,577,583,596,599,622,632,633, expScores:189,300,211,226,376,292,456,322,320,269,306,264,722,403,255,245,213,302,180,154,382,299,206,269,200,222,168,206,338,182,131,258,316,280, srow:2076700 |
| 35380 | chr19 | 55591291 | 55592142 | wgEncodeRegTfbsClusteredV3 | KDM5B | score:264, expCount:1, expNums:31, expScores:202, srow:2076701 |
| 35380 | chr19 | 55591440 | 55592259 | wgEncodeRegTfbsClusteredV3 | MAX | score:1000, expCount:5, expNums:223,296,395,511,576, expScores:208,252,136,667,507, srow:2076707 |
| 35380 | chr19 | 55591490 | 55592198 | wgEncodeRegTfbsClusteredV3 | E2F6 | score:669, expCount:3, expNums:215,386,495, expScores:324,123,540, srow:2076713 |
| 35380 | chr19 | 55591627 | 55592277 | wgEncodeRegTfbsClusteredV3 | IRF1 | score:138, expCount:1, expNums:506, expScores:114, srow:2076715 |
| 35380 | chr19 | 55591647 | 55592026 | wgEncodeRegTfbsClusteredV3 | ELK1 | score:151, expCount:1, expNums:496, expScores:151, srow:2076716 |
| 35380 | chr19 | 55591673 | 55592176 | wgEncodeRegTfbsClusteredV3 | CHD1 | score:186, expCount:1, expNums:23, expScores:186, srow:2076717 |
| 35380 | chr19 | 55591680 | 55592189 | wgEncodeRegTfbsClusteredV3 | SAP30 | score:191, expCount:1, expNums:34, expScores:191, srow:2076718 |
| 35380 | chr19 | 55591713 | 55592208 | wgEncodeRegTfbsClusteredV3 | HMGN3 | score:175, expCount:1, expNums:501, expScores:175, srow:2076719 |
| 35380 | chr19 | 55591723 | 55592124 | wgEncodeRegTfbsClusteredV3 | PHF8 | score:721, expCount:1, expNums:30, expScores:721, srow:2076720 |
| 35380 | chr19 | 55591738 | 55592137 | wgEncodeRegTfbsClusteredV3 | TBL1XR1 | score:180, expCount:1, expNums:543, expScores:180, srow:2076721 |
| 35380 | chr19 | 55591847 | 55592156 | wgEncodeRegTfbsClusteredV3 | BHLHE40 | score:281, expCount:1, expNums:472, expScores:281, srow:2076722 |
| 35380 | chr19 | 55591860 | 55592348 | wgEncodeRegTfbsClusteredV3 | MYC | score:626, expCount:8, expNums:486,487,488,489,575,620,624,626, expScores:117,458,250,626,232,147,539,376, srow:2076723 |
| 35380 | chr19 | 55591871 | 55592214 | wgEncodeRegTfbsClusteredV3 | MXI1 | score:180, expCount:1, expNums:513, expScores:180, srow:2076724 |
| 35380 | chr19 | 55591883 | 55592180 | wgEncodeRegTfbsClusteredV3 | USF1 | score:215, expCount:2, expNums:118,243, expScores:141,215, srow:2076725 |
| 35380 | chr19 | 55591908 | 55592167 | wgEncodeRegTfbsClusteredV3 | SIN3AK20 | score:151, expCount:1, expNums:232, expScores:151, srow:2076726 |
| 35380 | chr19 | 55591914 | 55592237 | wgEncodeRegTfbsClusteredV3 | BACH1 | score:258, expCount:1, expNums:341, expScores:258, srow:2076727 |
| 35380 | chr19 | 55591919 | 55592282 | wgEncodeRegTfbsClusteredV3 | ELF1 | score:786, expCount:2, expNums:88,217, expScores:222,786, srow:2076728 |
| 35380 | chr19 | 55591933 | 55592212 | wgEncodeRegTfbsClusteredV3 | CREB1 | score:123, expCount:1, expNums:47, expScores:123, srow:2076729 |
| 35380 | chr19 | 55591940 | 55592559 | wgEncodeRegTfbsClusteredV3 | EZH2 | score:289, expCount:1, expNums:43, expScores:289, srow:2076730 |
| 35380 | chr19 | 55591940 | 55592183 | wgEncodeRegTfbsClusteredV3 | EGR1 | score:183, expCount:1, expNums:216, expScores:183, srow:2076731 |
| 35380 | chr19 | 55591957 | 55592356 | wgEncodeRegTfbsClusteredV3 | TAF1 | score:113, expCount:1, expNums:238, expScores:113, srow:2076732 |
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Omics Overlaps
| Dmrid | Omic Set | Data | Plot |
|---|---|---|---|
| 35380 | cellmeth_recounts | PrEC: 210, LNCaP: 701, DU145: 101 |  |
| 35380 | cellmeth_diffreps_PrECvsLNCaP | A=14, B=91, Length=520, Event=Up, log2FC=2.7, padj=2.27800853994294e-13 |  |
| 35380 | cellmeth_diffreps_PrECvsLNCaP | A=26, B=160, Length=760, Event=Up, log2FC=2.62, padj=0 |  |
| 35380 | cellmeth_diffreps_PrECvsDU145 | A=0, B=11, Length=220, Event=Up, log2FC=Inf, padj=0.00313959514768542 |  |
| 35380 | cellmeth_diffreps_PrECvsDU145 | A=272, B=29, Length=880, Event=Down, log2FC=-3.23, padj=0 |  |
| 35380 | cellmeth_diffreps_LNCaPvsDU145 | A=97.28, B=13.1, Length=520, Event=Down, log2FC=-2.89, padj=0 |  |
| 35380 | cellmeth_diffreps_LNCaPvsDU145 | A=0, B=11.22, Length=200, Event=Up, log2FC=Inf, padj=0.00708953135814864 |  |
| 35380 | cellmeth_diffreps_LNCaPvsDU145 | A=496.04, B=55.19, Length=1680, Event=Down, log2FC=-3.17, padj=0 |  |
| 35380 | cellexp | id=ENSG00000131037, name=EPS8L1, PrEC=1960, str=4651, LNCaP=554, str=135, DU145=294, str=776 |  |
| 35380 | tcgameth | site:cg09503045, B=0.33, L=0.53, H=0.54 |  |
| 35380 | tcgameth | site:cg12020396, B=0.44, L=0.63, H=0.6 |  |
| 35380 | tcgameth | site:cg21121496, B=0.11, L=0.52, H=0.54 |  |
| 35380 | tcgameth | site:cg24815529, B=0.2, L=0.44, H=0.43 |  |
| 35380 | tcgaexp | gene=EPS8L1, entrez=54869, pos=chr19:55583388-55599291(+), B=1470, L=2382, M=2173, H=1668 |  |