DMR 35405 chr19:58219801-58220800 (1000bp)
| DMR Stats | |
|---|---|
| Position | chr19:58219801-58220800 (View on UCSC) |
| Width | 1000bp |
| Genomic Context | promoter |
| Nearest Genes | ZNF776, ZNF154 (0bp away) |
| ANODEV p-value | 1.99025758077e-07 |
| Frequencies | Benign: 0.0 (0.0%), Low: 5.0 (83.33%), High: 8.0 (88.89 %) |
| Frequent? |
Region Count Boxplot
Region Overview
Gene Overlaps
| Dmrid | Gene Symbol | Gene Id | Isoform Id | Isoform Chr | Isoform Start | Isoform End | Isoform Strand | Overlap Bp | Query Overlap Per | Isoform Overlap Per | Noncoding | Promoter Per | Exonintron Per | End Per |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 35405 | ZNF776 | 15898 | uc002qpx.4 | chr19 | 58193337 | 58269527 | + | 1000 | 100.0 | 0.25 | 0 | 0.0 | E1 (0), I1 (100), E2 (0), I2 (0), E3 (0) | 0.0 |
| 35405 | ZNF154 | 15899 | uc002qpy.2 | chr19 | 58208735 | 58220579 | - | 779 | 77.9 | 0.25 | 1 | 72.1 | E1 (27.3), I1 (50.6), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0) | 0.0 |
| 35405 | ZNF154 | 15899 | uc010euf.3 | chr19 | 58211810 | 58220579 | - | 779 | 77.9 | 0.17 | 0 | 72.1 | E1 (27.3), I1 (50.6), E2 (0), I2 (0), E3 (0) | 0.0 |
- 3 geness
Feature Overlaps
| Dmrid | Feature Chr | Feature Start | Feature End | Set | Name | Fields |
|---|---|---|---|---|---|---|
| 35405 | chr19 | 58219906 | 58220755 | wgEncodeRegDnaseClusteredV2 | 91 | score:1000, srow:592195 |
| 35405 | chr19 | 58219864 | 58220682 | wgEncodeRegTfbsClusteredV3 | SIN3A | score:359, expCount:1, expNums:357, expScores:352, srow:2084200 |
| 35405 | chr19 | 58219948 | 58220383 | wgEncodeRegTfbsClusteredV3 | MAX | score:169, expCount:1, expNums:296, expScores:169, srow:2084201 |
| 35405 | chr19 | 58220029 | 58220807 | wgEncodeRegTfbsClusteredV3 | POLR2A | score:1000, expCount:8, expNums:105,123,146,147,326,328,332,610, expScores:535,323,474,1000,492,217,306,225, srow:2084202 |
| 35405 | chr19 | 58220074 | 58220743 | wgEncodeRegTfbsClusteredV3 | RBBP5 | score:194, expCount:1, expNums:8, expScores:194, srow:2084203 |
| 35405 | chr19 | 58220204 | 58220719 | wgEncodeRegTfbsClusteredV3 | TAF1 | score:522, expCount:1, expNums:157, expScores:522, srow:2084204 |
| 35405 | chr19 | 58220257 | 58220836 | wgEncodeRegTfbsClusteredV3 | ATF2 | score:259, expCount:1, expNums:134, expScores:259, srow:2084205 |
| 35405 | chr19 | 58220387 | 58220762 | wgEncodeRegTfbsClusteredV3 | TBP | score:152, expCount:1, expNums:359, expScores:152, srow:2084206 |
| 35405 | chr19 | 58220398 | 58220767 | wgEncodeRegTfbsClusteredV3 | RELA | score:192, expCount:1, expNums:325, expScores:192, srow:2084207 |
| 35405 | chr19 | 58220410 | 58220745 | wgEncodeRegTfbsClusteredV3 | YY1 | score:1000, expCount:7, expNums:119,128,133,162,244,245,579, expScores:888,443,513,1000,181,326,657, srow:2084208 |
| 35405 | chr19 | 58220491 | 58220814 | wgEncodeRegTfbsClusteredV3 | SP1 | score:179, expCount:1, expNums:153, expScores:179, srow:2084209 |
| 35405 | chr19 | 58220524 | 58220813 | wgEncodeRegTfbsClusteredV3 | ZNF143 | score:1000, expCount:2, expNums:322,361, expScores:972,1000, srow:2084210 |
| 35405 | chr19 | 58220554 | 58220789 | wgEncodeRegTfbsClusteredV3 | SIX5 | score:504, expCount:2, expNums:111,152, expScores:287,504, srow:2084211 |
| 35405 | chr19 | 58220562 | 58220781 | wgEncodeRegTfbsClusteredV3 | PBX3 | score:134, expCount:1, expNums:102, expScores:134, srow:2084212 |
| 35405 | chr19 | 58220688 | 58220693 | phastConsElements100way | lod=13 | score:247, srow:4364688 |
| 35405 | chr19 | 58220190 | 58220517 | cpgIsland | CpG: 31 | length:328, cpgNum:31, gcNum:223, perCpg:18.9, perGc:68, obsExp:0.82, srow:14526 |
| 35405 | chr19 | 58218190 | 58220189 | cpgShore | — | values(x.gr)[overs$srow, ]:26112 |
| 35405 | chr19 | 58220518 | 58222517 | cpgShore | — | values(x.gr)[overs$srow, ]:26113 |
- 18 featuress
Omics Overlaps
| Dmrid | Omic Set | Data | Plot |
|---|---|---|---|
| 35405 | cellmeth_recounts | PrEC: 0, LNCaP: 37, DU145: 61 |  |
| 35405 | cellmeth_diffreps_PrECvsLNCaP | A=0, B=14, Length=300, Event=Up, log2FC=Inf, padj=0.000432533284720616 |  |
| 35405 | cellmeth_diffreps_PrECvsDU145 | A=0, B=39, Length=580, Event=Up, log2FC=Inf, padj=2.63673312620663e-11 |  |
| 35405 | cellexp | id=ENSG00000179909, name=ZNF154, PrEC=159, str=403, LNCaP=17, str=38, DU145=9, str=9 |  |
| 35405 | cellexp | id=ENSG00000204519, name=ZNF551, PrEC=879, str=844, LNCaP=830, str=1075, DU145=375, str=609 |  |
| 35405 | cellexp | id=ENSG00000269026, name=AC003006.7, PrEC=1, str=0, LNCaP=1, str=4, DU145=0, str=0 |  |
| 35405 | tcgameth | site:cg03234186, B=0.32, L=0.66, H=0.63 |  |
| 35405 | tcgameth | site:cg05661282, B=0.15, L=0.63, H=0.61 |  |
| 35405 | tcgameth | site:cg08668790, B=0.29, L=0.69, H=0.66 |  |
| 35405 | tcgameth | site:cg11294513, B=0.28, L=0.63, H=0.6 |  |
| 35405 | tcgameth | site:cg12506930, B=0.34, L=0.71, H=0.69 |  |
| 35405 | tcgameth | site:cg21790626, B=0.14, L=0.6, H=0.54 |  |
| 35405 | tcgameth | site:cg26465391, B=0.31, L=0.66, H=0.63 |  |
| 35405 | tcgameth | site:cg27049766, B=0.23, L=0.61, H=0.6 |  |
| 35405 | tcgaexp | gene=ZNF154, entrez=7710, pos=chr19:58208735-58220579(-), B=257, L=89, M=85, H=78 |  |
| 35405 | tcgaexp | gene=ZNF776, entrez=284309, pos=chr19:58193337-58269527(+), B=1318, L=1172, M=1318, H=1583 |  |