DMR 35416 chr20:590301-590450 (150bp)

DMR Stats
Positionchr20:590301-590450 (View on UCSC)
Width150bp
Genomic Contextpromoter
Nearest GenesTCF15 (0bp away)
ANODEV p-value0.0101864361153
FrequenciesBenign: 0.0 (0.0%), Low: 5.0 (83.33%), High: 7.0 (77.78 %)
Frequent?

Region Count Boxplot

Region Overview

Gene Overlaps

Dmrid Gene Symbol Gene Id Isoform Id Isoform Chr Isoform Start Isoform End Isoform Strand Overlap Bp Query Overlap Per Isoform Overlap Per Noncoding Promoter Per Exonintron Per End Per
35416 TCF15 17879 uc002wdz.3 chr20 584637 590910 - 150 100.0 0.03 0 26.67 E1 (62.67), I1 (37.33), E2 (0) 0.0
  • 1 genes

Feature Overlaps

Dmrid Feature Chr Feature Start Feature End Set Name Fields
35416 chr20 589306 590595 wgEncodeRegDnaseClusteredV2 40 score:671, srow:699301
35416 chr20 589827 592423 wgEncodeRegTfbsClusteredV3 EZH2 score:712, expCount:10, expNums:3,13,15,17,19,21,36,38,40,43, expScores:129,368,276,200,128,385,449,219,247,278, srow:2439211
35416 chr20 590026 590695 wgEncodeRegTfbsClusteredV3 RBBP5 score:175, expCount:1, expNums:8, expScores:175, srow:2439212
35416 chr20 590264 590767 wgEncodeRegTfbsClusteredV3 CHD1 score:175, expCount:1, expNums:23, expScores:175, srow:2439213
35416 chr20 590348 590359 tfbsConsSites V$PAX4_03 score:914, zScore:1.81, srow:3029746
35416 chr20 590371 590381 tfbsConsSites V$NFE2_01 score:859, zScore:1.66, srow:3029747
35416 chr20 590387 590399 tfbsConsSites V$ZID_01 score:846, zScore:1.66, srow:3029748
35416 chr20 590390 590399 tfbsConsSites V$CDPCR1_01 score:839, zScore:1.74, srow:3029749
35416 chr20 590390 590410 tfbsConsSites V$PAX4_01 score:847, zScore:2.56, srow:3029750
35416 chr20 590392 590411 tfbsConsSites V$YY1_02 score:764, zScore:1.7, srow:3029751
35416 chr20 590395 590413 tfbsConsSites V$SEF1_C score:720, zScore:1.67, srow:3029752
35416 chr20 590397 590411 tfbsConsSites V$TAXCREB_01 score:804, zScore:2.18, srow:3029753
35416 chr20 590441 590461 tfbsConsSites V$NRSF_01 score:737, zScore:2.16, srow:3029754
35416 chr20 590349 590398 phastConsElements100way lod=626 score:631, srow:5227653
35416 chr20 590400 590404 phastConsElements100way lod=83 score:431, srow:5227654
35416 chr20 590407 590409 phastConsElements100way lod=19 score:285, srow:5227655
35416 chr20 590413 590421 phastConsElements100way lod=31 score:333, srow:5227656
35416 chr20 590433 590442 phastConsElements100way lod=57 score:394, srow:5227657
35416 chr20 590223 591222 cpgIsland CpG: 97 length:1000, cpgNum:97, gcNum:538, perCpg:19.4, perGc:53.8, obsExp:1.34, srow:16293
  • 19 featuress

Omics Overlaps

Dmrid Omic Set Data Plot
35416 cellmeth_recounts PrEC: 6, LNCaP: 1640, DU145: 40
35416 cellmeth_diffreps_PrECvsLNCaP A=38, B=3946, Length=2860, Event=Up, log2FC=6.7, padj=0
35416 cellmeth_diffreps_PrECvsDU145 A=3, B=27, Length=320, Event=Up, log2FC=3.17, padj=0.000149074441577724
35416 cellmeth_diffreps_LNCaPvsDU145 A=4046.34, B=77.64, Length=1600, Event=Down, log2FC=-5.7, padj=0
35416 cellexp id=ENSG00000125878, name=TCF15, PrEC=1, str=0, LNCaP=0, str=0, DU145=13, str=3
35416 tcgaexp gene=TCF15, entrez=6939, pos=chr20:584637-590910(-), B=8, L=12, M=12, H=16