DMR 35645 chr20:44640201-44640350 (150bp)

DMR Stats
Positionchr20:44640201-44640350 (View on UCSC)
Width150bp
Genomic Contextexon
Nearest GenesMMP9 (0bp away)
ANODEV p-value0.0389808213057
FrequenciesBenign: 1.0 (14.29%), Low: 5.0 (83.33%), High: 8.0 (88.89 %)
Frequent?

Region Count Boxplot

Region Overview

Gene Overlaps

Dmrid Gene Symbol Gene Id Isoform Id Isoform Chr Isoform Start Isoform End Isoform Strand Overlap Bp Query Overlap Per Isoform Overlap Per Noncoding Promoter Per Exonintron Per End Per
35645 MMP9 18400 uc002xqz.3 chr20 44637547 44645200 + 150 100.0 0.87 0 0.0 E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (8), E6 (92), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0), I11 (0), E12 (0), I12 (0), E13 (0) 0.0
  • 1 genes

Feature Overlaps

Dmrid Feature Chr Feature Start Feature End Set Name Fields
35645 chr20 44640221 44640255 wgEncodeRegDnaseClusteredV2 2 score:472, srow:722659
35645 chr20 44640266 44640795 wgEncodeRegDnaseClusteredV2 92 score:1000, srow:722660
35645 chr20 44638924 44640567 wgEncodeRegTfbsClusteredV3 EZH2 score:731, expCount:8, expNums:13,15,19,21,36,38,40,43, expScores:402,241,155,496,211,227,305,380, srow:2520430
35645 chr20 44640031 44640666 wgEncodeRegTfbsClusteredV3 POLR2A score:333, expCount:2, expNums:146,147, expScores:260,333, srow:2520432
35645 chr20 44640173 44640782 wgEncodeRegTfbsClusteredV3 SP4 score:314, expCount:1, expNums:155, expScores:314, srow:2520433
35645 chr20 44640189 44640743 wgEncodeRegTfbsClusteredV3 TBP score:324, expCount:2, expNums:359,545, expScores:324,147, srow:2520434
35645 chr20 44640255 44640495 wgEncodeRegTfbsClusteredV3 TAF1 score:410, expCount:1, expNums:157, expScores:410, srow:2520435
35645 chr20 44640289 44640752 wgEncodeRegTfbsClusteredV3 SP1 score:188, expCount:2, expNums:153,234, expScores:188,122, srow:2520436
35645 chr20 44640297 44640314 tfbsConsSites V$CMYB_01 score:806, zScore:1.98, srow:3126857
35645 chr20 44640317 44640338 tfbsConsSites V$HEN1_02 score:754, zScore:1.72, srow:3126858
35645 chr20 44640339 44640356 tfbsConsSites V$CMYB_01 score:825, zScore:2.33, srow:3126859
35645 chr20 44640217 44640217 cosmic COSM419369 srow:756277
35645 chr20 44640290 44640290 cosmic COSM443923 srow:756278
35645 chr20 44640312 44640312 cosmic COSM312902 srow:756279
35645 chr20 44640332 44640332 cosmic COSM1027385 srow:756280
35645 chr20 44640341 44640341 cosmic COSM188902 srow:756281
35645 chr20 44640349 44640349 cosmic COSM1241441 srow:756282
35645 chr20 44640218 44640768 oreganno OREG0025989 id:OREG0025989, srow:14201
35645 chr20 44640210 44640222 phastConsElements100way lod=105 score:454, srow:5380114
35645 chr20 44640230 44640234 phastConsElements100way lod=66 score:408, srow:5380115
35645 chr20 44640239 44640240 phastConsElements100way lod=16 score:268, srow:5380116
35645 chr20 44640242 44640243 phastConsElements100way lod=44 score:368, srow:5380117
35645 chr20 44640248 44640261 phastConsElements100way lod=101 score:450, srow:5380118
35645 chr20 44640263 44640266 phastConsElements100way lod=48 score:377, srow:5380119
35645 chr20 44640269 44640270 phastConsElements100way lod=35 score:345, srow:5380120
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  • 25 of 38 featuress

Omics Overlaps

Dmrid Omic Set Data Plot
35645 cellmeth_recounts PrEC: 3, LNCaP: 16, DU145: 17
35645 cellexp id=ENSG00000100985, name=MMP9, PrEC=649, str=4635, LNCaP=2, str=7, DU145=8, str=6
35645 tcgaexp gene=MMP9, entrez=4318, pos=chr20:44637547-44645200(+), B=294, L=1071, M=875, H=857