DMR 35647 chr20:44685701-44687850 (2150bp)

DMR Stats
Positionchr20:44685701-44687850 (View on UCSC)
Width2150bp
Genomic Context3' end
Nearest GenesSLC12A5 (0bp away)
ANODEV p-value3.91797945801e-08
FrequenciesBenign: 0.0 (0.0%), Low: 6.0 (100.0%), High: 8.0 (88.89 %)
Frequent?

Region Count Boxplot

Region Overview

Gene Overlaps

Dmrid Gene Symbol Gene Id Isoform Id Isoform Chr Isoform Start Isoform End Isoform Strand Overlap Bp Query Overlap Per Isoform Overlap Per Noncoding Promoter Per Exonintron Per End Per
35647 SLC12A5 18401 uc002xrb.2 chr20 44657821 44688789 + 2150 100.0 0.42 0 0.0 E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0), I11 (0), E12 (0), I12 (0), E13 (0), I13 (0), E14 (0), I14 (0), E15 (0), I15 (0), E16 (0), I16 (0), E17 (0), I17 (0), E18 (0), I18 (0), E19 (0), I19 (0), E20 (0), I20 (0), E21 (0), I21 (0), E22 (0), I22 (0), E23 (0), I23 (0), E24 (0), I24 (5.02), E25 (6.23), I25 (9.81), E26 (78.98) 2.84
35647 SLC12A5 18401 uc010zxl.1 chr20 44650329 44688789 + 2150 100.0 0.03 0 0.0 E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0), I11 (0), E12 (0), I12 (0), E13 (0), I13 (0), E14 (0), I14 (0), E15 (0), I15 (0), E16 (0), I16 (0), E17 (0), I17 (0), E18 (0), I18 (0), E19 (0), I19 (0), E20 (0), I20 (0), E21 (0), I21 (0), E22 (0), I22 (0), E23 (0), I23 (0), E24 (0), I24 (5.02), E25 (6.23), I25 (9.81), E26 (78.98) 2.84
  • 2 geness

Feature Overlaps

Dmrid Feature Chr Feature Start Feature End Set Name Fields
35647 chr20 44685841 44686615 wgEncodeRegDnaseClusteredV2 88 score:827, srow:722719
35647 chr20 44686626 44688035 wgEncodeRegDnaseClusteredV2 92 score:728, srow:722720
35647 chr20 44685776 44686425 wgEncodeRegTfbsClusteredV3 SMARCC1 score:230, expCount:1, expNums:371, expScores:230, srow:2520624
35647 chr20 44685812 44686282 wgEncodeRegTfbsClusteredV3 REST score:1000, expCount:12, expNums:59,98,144,167,188,189,226,248,252,257,258,274, expScores:1000,1000,1000,1000,1000,1000,1000,1000,1000,768,1000,1000, srow:2520625
35647 chr20 44685858 44686984 wgEncodeRegTfbsClusteredV3 EZH2 score:328, expCount:3, expNums:19,40,43, expScores:97,237,285, srow:2520626
35647 chr20 44685877 44686200 wgEncodeRegTfbsClusteredV3 SIN3AK20 score:216, expCount:1, expNums:151, expScores:216, srow:2520627
35647 chr20 44685914 44686157 wgEncodeRegTfbsClusteredV3 SP2 score:152, expCount:1, expNums:197, expScores:152, srow:2520628
35647 chr20 44685917 44686206 wgEncodeRegTfbsClusteredV3 ZNF143 score:396, expCount:1, expNums:361, expScores:396, srow:2520629
35647 chr20 44685928 44686144 wgEncodeRegTfbsClusteredV3 SIN3A score:541, expCount:1, expNums:357, expScores:541, srow:2520630
35647 chr20 44685932 44686211 wgEncodeRegTfbsClusteredV3 PAX5 score:131, expCount:1, expNums:129, expScores:131, srow:2520631
35647 chr20 44686399 44687208 wgEncodeRegTfbsClusteredV3 SUZ12 score:207, expCount:1, expNums:578, expScores:207, srow:2520632
35647 chr20 44686665 44687268 wgEncodeRegTfbsClusteredV3 CTCF score:891, expCount:54, expNums:2,5,14,16,18,20,35,37,39,42,44,137,463,597,605,609,618,635,636,639,640,641,642,643,644,646,650,652,653,655,657,658,659,660,661,662,664,668,669,671,672,673,674,675,676,677,678,681,682,683,684,685,686,689, expScores:120,534,133,226,138,310,151,259,580,228,397,370,145,205,158,327,130,241,202,424,353,232,329,198,231,455,242,129,295,108,303,140,530,166,822,597,373,217,399,102,150,623,355,359,210,188,294,90,442,226,235,176,145,209, srow:2520633
35647 chr20 44686779 44687448 wgEncodeRegTfbsClusteredV3 RBBP5 score:175, expCount:1, expNums:8, expScores:175, srow:2520634
35647 chr20 44686962 44687205 wgEncodeRegTfbsClusteredV3 REST score:138, expCount:1, expNums:144, expScores:138, srow:2520635
35647 chr20 44686962 44687224 wgEncodeRegTfbsClusteredV3 RAD21 score:438, expCount:2, expNums:149,355, expScores:438,163, srow:2520636
35647 chr20 44687006 44687269 wgEncodeRegTfbsClusteredV3 CEBPB score:208, expCount:1, expNums:343, expScores:208, srow:2520637
35647 chr20 44687636 44688055 wgEncodeRegTfbsClusteredV3 POLR2A score:325, expCount:1, expNums:192, expScores:325, srow:2520638
35647 chr20 44687735 44688017 wgEncodeRegTfbsClusteredV3 CTCF score:347, expCount:5, expNums:5,137,605,609,630, expScores:347,321,121,261,158, srow:2520639
35647 chr20 44687761 44688009 wgEncodeRegTfbsClusteredV3 RAD21 score:284, expCount:2, expNums:149,355, expScores:284,212, srow:2520640
35647 chr20 44685849 44685868 tfbsConsSites V$PPARA_01 score:750, zScore:1.96, srow:3127285
35647 chr20 44685850 44685862 tfbsConsSites V$RORA1_01 score:934, zScore:2.79, srow:3127286
35647 chr20 44685850 44685862 tfbsConsSites V$RORA2_01 score:854, zScore:1.91, srow:3127287
35647 chr20 44685852 44685874 tfbsConsSites V$PPARG_02 score:693, zScore:1.88, srow:3127288
35647 chr20 44685863 44685886 tfbsConsSites V$GFI1_01 score:812, zScore:2.1, srow:3127289
35647 chr20 44685891 44685904 tfbsConsSites V$CEBPB_02 score:864, zScore:2.01, srow:3127290
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  • 25 of 104 featuress

Omics Overlaps

Dmrid Omic Set Data Plot
35647 cellmeth_recounts PrEC: 47, LNCaP: 2021, DU145: 29
35647 cellmeth_diffreps_PrECvsLNCaP A=72, B=1620, Length=2500, Event=Up, log2FC=4.49, padj=0
35647 cellmeth_diffreps_PrECvsDU145 A=14, B=0, Length=200, Event=Down, log2FC=-Inf, padj=0.000506195974236337
35647 cellmeth_diffreps_PrECvsDU145 A=25, B=2, Length=360, Event=Down, log2FC=-3.64, padj=9.00706007976801e-05
35647 cellmeth_diffreps_LNCaPvsDU145 A=1731.85, B=21.51, Length=2540, Event=Down, log2FC=-6.33, padj=0
35647 cellexp id=ENSG00000124140, name=SLC12A5, PrEC=4, str=23, LNCaP=2, str=3, DU145=15, str=13
35647 tcgameth site:cg01460436, B=0.32, L=0.62, H=0.61
35647 tcgameth site:cg04403809, B=0.32, L=0.51, H=0.52
35647 tcgameth site:cg06132069, B=0.25, L=0.56, H=0.56
35647 tcgameth site:cg07060233, B=0.4, L=0.58, H=0.57
35647 tcgameth site:cg20003638, B=0.64, L=0.84, H=0.83
35647 tcgaexp gene=SLC12A5, entrez=57468, pos=chr20:44650329-44688789(+), B=3, L=3, M=8, H=11