DMR 35717 chr20:55499901-55500450 (550bp)

DMR Stats
Positionchr20:55499901-55500450 (View on UCSC)
Width550bp
Genomic Contextintergenic
Nearest GenesBMP7 (243358bp away)
ANODEV p-value0.000614619769459
FrequenciesBenign: 1.0 (14.29%), Low: 5.0 (83.33%), High: 7.0 (77.78 %)
Frequent?

Region Count Boxplot

Region Overview

Gene Overlaps

Dmrid Gene Symbol Gene Id Isoform Id Isoform Chr Isoform Start Isoform End Isoform Strand Overlap Bp Query Overlap Per Isoform Overlap Per Noncoding Promoter Per Exonintron Per End Per

Feature Overlaps

Dmrid Feature Chr Feature Start Feature End Set Name Fields
35717 chr20 55499926 55500935 wgEncodeRegDnaseClusteredV2 39 score:1000, srow:730697
35717 chr20 55499859 55500114 wgEncodeRegTfbsClusteredV3 HDAC2 score:172, expCount:1, expNums:141, expScores:172, srow:2554400
35717 chr20 55500122 55501278 wgEncodeRegTfbsClusteredV3 EZH2 score:711, expCount:7, expNums:6,13,15,36,38,40,43, expScores:328,491,242,515,297,400,292, srow:2554401
35717 chr20 55500155 55500734 wgEncodeRegTfbsClusteredV3 ATF2 score:387, expCount:1, expNums:134, expScores:387, srow:2554402
35717 chr20 55500169 55500768 wgEncodeRegTfbsClusteredV3 TCF7L2 score:1000, expCount:1, expNums:367, expScores:426, srow:2554403
35717 chr20 55500250 55500919 wgEncodeRegTfbsClusteredV3 RBBP5 score:208, expCount:1, expNums:8, expScores:208, srow:2554404
35717 chr20 55500254 55500529 wgEncodeRegTfbsClusteredV3 EGR1 score:134, expCount:1, expNums:138, expScores:134, srow:2554405
35717 chr20 55500281 55500616 wgEncodeRegTfbsClusteredV3 YY1 score:192, expCount:1, expNums:162, expScores:192, srow:2554406
35717 chr20 55500287 55500530 wgEncodeRegTfbsClusteredV3 JUND score:239, expCount:1, expNums:142, expScores:239, srow:2554407
35717 chr20 55500291 55500521 wgEncodeRegTfbsClusteredV3 NANOG score:796, expCount:1, expNums:143, expScores:796, srow:2554408
35717 chr20 55500296 55500570 wgEncodeRegTfbsClusteredV3 CTCF score:223, expCount:3, expNums:628,630,631, expScores:193,223,187, srow:2554409
35717 chr20 55500349 55500868 wgEncodeRegTfbsClusteredV3 SIN3A score:217, expCount:1, expNums:357, expScores:217, srow:2554410
35717 chr20 55500400 55500639 wgEncodeRegTfbsClusteredV3 FOXA1 score:196, expCount:1, expNums:271, expScores:196, srow:2554411
35717 chr20 55499911 55500024 phastConsElements100way lod=669 score:637, srow:5416660
35717 chr20 55500042 55500051 phastConsElements100way lod=33 score:340, srow:5416661
35717 chr20 55500056 55500133 phastConsElements100way lod=437 score:595, srow:5416662
35717 chr20 55500138 55500143 phastConsElements100way lod=23 score:304, srow:5416663
35717 chr20 55500160 55500163 phastConsElements100way lod=12 score:240, srow:5416664
35717 chr20 55500168 55500530 phastConsElements100way lod=2733 score:777, srow:5416665
35717 chr20 55500348 55501102 cpgIsland CpG: 64 length:755, cpgNum:64, gcNum:446, perCpg:17, perGc:59.1, obsExp:0.97, srow:16802
35717 chr20 55498348 55500347 cpgShore — values(x.gr)[overs$srow, ]:30294
  • 21 featuress

Omics Overlaps

Dmrid Omic Set Data Plot
35717 cellmeth_recounts PrEC: 33, LNCaP: 155, DU145: 33
35717 cellmeth_diffreps_PrECvsLNCaP A=9, B=129, Length=820, Event=Up, log2FC=3.84, padj=0
35717 cellmeth_diffreps_PrECvsDU145 A=42, B=14, Length=320, Event=Down, log2FC=-1.58, padj=0.00428372266100435
35717 cellmeth_diffreps_LNCaPvsDU145 A=175.32, B=30.87, Length=1000, Event=Down, log2FC=-2.51, padj=0
35717 tcgameth site:cg01209909, B=0.37, L=0.48, H=0.45