DMR 35728 chr20:55972801-55973050 (250bp)

DMR Stats
Positionchr20:55972801-55973050 (View on UCSC)
Width250bp
Genomic Contextintron
Nearest GenesRBM38, MIR5095 (0bp away)
ANODEV p-value3.73753592702e-08
FrequenciesBenign: 1.0 (14.29%), Low: 6.0 (100.0%), High: 9.0 (100.0 %)
Frequent?

Region Count Boxplot

Region Overview

Gene Overlaps

Dmrid Gene Symbol Gene Id Isoform Id Isoform Chr Isoform Start Isoform End Isoform Strand Overlap Bp Query Overlap Per Isoform Overlap Per Noncoding Promoter Per Exonintron Per End Per
35728 RBM38 18494 uc010zzj.2 chr20 55966454 55984386 + 250 100.0 1.32 0 0.0 E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (100), E4 (0) 0.0
35728 RBM38 18494 uc010zzk.2 chr20 55966454 55984386 + 250 100.0 1.32 0 0.0 E1 (0), I1 (0), E2 (0), I2 (100), E3 (0) 0.0
35728 MIR5095 18491 uc021wfc.1 chr20 55913213 55998278 + 250 100.0 3.08 1 0.0 E1 (0), I1 (100), E2 (0) 0.0
  • 3 geness

Feature Overlaps

Dmrid Feature Chr Feature Start Feature End Set Name Fields
35728 chr20 55972726 55973195 wgEncodeRegDnaseClusteredV2 23 score:906, srow:731278
35728 chr20 55964136 55977121 wgEncodeRegTfbsClusteredV3 POLR2A score:1000, expCount:56, expNums:32,61,62,78,104,105,123,124,130,131,147,163,168,192,206,207,229,283,306,307,308,326,328,330,332,334,336,338,340,362,366,402,445,446,520,521,522,523,525,563,564,577,583,585,596,599,602,610,613,616,619,622,632,633,634,637, expScores:189,1000,1000,802,465,402,316,275,271,295,401,263,359,416,160,274,370,240,264,139,220,369,250,235,266,820,179,169,212,228,133,703,237,218,217,210,209,186,257,230,294,536,623,178,758,507,143,125,227,396,122,302,257,322,922,380, srow:2555471
35728 chr20 55972682 55973117 wgEncodeRegTfbsClusteredV3 MAX score:254, expCount:1, expNums:296, expScores:254, srow:2555634
35728 chr20 55972696 55973131 wgEncodeRegTfbsClusteredV3 MXI1 score:230, expCount:1, expNums:298, expScores:230, srow:2555635
35728 chr20 55972735 55973064 wgEncodeRegTfbsClusteredV3 BHLHE40 score:417, expCount:1, expNums:284, expScores:417, srow:2555636
35728 chr20 55972735 55973144 wgEncodeRegTfbsClusteredV3 TBL1XR1 score:162, expCount:1, expNums:316, expScores:162, srow:2555637
35728 chr20 55972755 55973362 wgEncodeRegTfbsClusteredV3 WRNIP1 score:169, expCount:1, expNums:320, expScores:144, srow:2555638
35728 chr20 55972762 55973081 wgEncodeRegTfbsClusteredV3 POU2F2 score:348, expCount:1, expNums:106, expScores:348, srow:2555639
35728 chr20 55972763 55973142 wgEncodeRegTfbsClusteredV3 CHD2 score:206, expCount:1, expNums:288, expScores:206, srow:2555640
35728 chr20 55972769 55973078 wgEncodeRegTfbsClusteredV3 PAX5 score:190, expCount:1, expNums:101, expScores:190, srow:2555641
35728 chr20 55972772 55973091 wgEncodeRegTfbsClusteredV3 SP1 score:128, expCount:1, expNums:112, expScores:128, srow:2555642
35728 chr20 55972816 55973100 wgEncodeRegTfbsClusteredV3 SPI1 score:301, expCount:2, expNums:107,126, expScores:301,199, srow:2555643
35728 chr20 55972866 55973069 wgEncodeRegTfbsClusteredV3 MYC score:243, expCount:1, expNums:625, expScores:243, srow:2555644
35728 chr20 55972885 55973009 wgEncodeRegTfbsClusteredV3 ELF1 score:161, expCount:1, expNums:88, expScores:161, srow:2555645
  • 14 featuress

Omics Overlaps

Dmrid Omic Set Data Plot
35728 cellmeth_recounts PrEC: 26, LNCaP: 87, DU145: 15
35728 cellmeth_diffreps_PrECvsDU145 A=39, B=9, Length=260, Event=Down, log2FC=-2.12, padj=0.000360132787051455
35728 cellmeth_diffreps_LNCaPvsDU145 A=73.76, B=11.22, Length=400, Event=Down, log2FC=-2.72, padj=3.01130304364477e-10
35728 cellexp id=ENSG00000132819, name=RBM38, PrEC=1230, str=1027, LNCaP=1146, str=907, DU145=1129, str=928
35728 tcgaexp gene=RBM38, entrez=55544, pos=chr20:55966454-55984386(+), B=2537, L=1709, M=1353, H=1168