DMR 35811 chr21:28337901-28338300 (400bp)

DMR Stats
Positionchr21:28337901-28338300 (View on UCSC)
Width400bp
Genomic Contextexon
Nearest GenesADAMTS5 (0bp away)
ANODEV p-value0.0162033408085
FrequenciesBenign: 0.0 (0.0%), Low: 5.0 (83.33%), High: 7.0 (77.78 %)
Frequent?

Region Count Boxplot

Region Overview

Gene Overlaps

Dmrid Gene Symbol Gene Id Isoform Id Isoform Chr Isoform Start Isoform End Isoform Strand Overlap Bp Query Overlap Per Isoform Overlap Per Noncoding Promoter Per Exonintron Per End Per
35811 ADAMTS5 18702 uc002ymg.3 chr21 28290231 28339439 - 400 100.0 0.04 0 0.0 E1 (100), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0) 0.0
  • 1 genes

Feature Overlaps

Dmrid Feature Chr Feature Start Feature End Set Name Fields
35811 chr21 28337801 28338395 wgEncodeRegDnaseClusteredV2 53 score:1000, srow:741208
35811 chr21 28337695 28338124 wgEncodeRegTfbsClusteredV3 CTCF score:1000, expCount:43, expNums:5,16,18,20,37,42,44,137,463,597,609,635,636,639,640,641,642,643,644,645,646,657,658,659,661,662,664,665,668,669,671,672,673,674,675,676,677,678,682,684,685,686,687, expScores:730,321,212,117,456,369,286,1000,123,980,523,156,507,658,197,326,527,522,393,509,567,404,312,529,412,521,167,458,173,394,430,343,417,214,550,694,244,395,404,220,536,397,120, srow:2585173
35811 chr21 28337719 28338094 wgEncodeRegTfbsClusteredV3 TBP score:166, expCount:1, expNums:359, expScores:166, srow:2585174
35811 chr21 28337759 28339047 wgEncodeRegTfbsClusteredV3 EZH2 score:452, expCount:3, expNums:21,36,40, expScores:337,224,219, srow:2585175
35811 chr21 28337780 28338089 wgEncodeRegTfbsClusteredV3 EP300 score:166, expCount:1, expNums:145, expScores:166, srow:2585176
35811 chr21 28337785 28338028 wgEncodeRegTfbsClusteredV3 RAD21 score:1000, expCount:2, expNums:149,355, expScores:1000,450, srow:2585177
35811 chr21 28337787 28338196 wgEncodeRegTfbsClusteredV3 POLR2A score:231, expCount:1, expNums:146, expScores:231, srow:2585178
35811 chr21 28337820 28338079 wgEncodeRegTfbsClusteredV3 TCF12 score:165, expCount:1, expNums:159, expScores:165, srow:2585179
35811 chr21 28337852 28337938 wgEncodeRegTfbsClusteredV3 YY1 score:390, expCount:1, expNums:162, expScores:390, srow:2585180
35811 chr21 28338007 28338816 wgEncodeRegTfbsClusteredV3 SUZ12 score:163, expCount:1, expNums:578, expScores:163, srow:2585181
35811 chr21 28338014 28338975 wgEncodeRegTfbsClusteredV3 RBBP5 score:303, expCount:1, expNums:8, expScores:193, srow:2585182
35811 chr21 28337897 28337916 tfbsConsSites V$MYCMAX_03 score:780, zScore:1.69, srow:3176985
35811 chr21 28337900 28337917 tfbsConsSites V$AHR_01 score:771, zScore:1.78, srow:3176986
35811 chr21 28337901 28337912 tfbsConsSites V$LMO2COM_01 score:983, zScore:2.63, srow:3176987
35811 chr21 28337902 28337911 tfbsConsSites V$MYOD_Q6 score:967, zScore:1.81, srow:3176988
35811 chr21 28337941 28337959 tfbsConsSites V$SEF1_C score:731, zScore:1.89, srow:3176989
35811 chr21 28337943 28337959 tfbsConsSites V$PPARG_03 score:791, zScore:2, srow:3176990
35811 chr21 28337965 28337982 tfbsConsSites V$AHR_01 score:801, zScore:2.3, srow:3176991
35811 chr21 28338140 28338158 tfbsConsSites V$AHRARNT_02 score:773, zScore:1.72, srow:3176992
35811 chr21 28338143 28338155 tfbsConsSites V$PAX3_01 score:818, zScore:2.11, srow:3176993
35811 chr21 28338223 28338243 tfbsConsSites V$PAX4_01 score:872, zScore:3.02, srow:3176994
35811 chr21 28338225 28338243 tfbsConsSites V$PAX2_01 score:850, zScore:3.45, srow:3176995
35811 chr21 28338227 28338250 tfbsConsSites V$COMP1_01 score:787, zScore:1.73, srow:3176996
35811 chr21 28337929 28337929 cosmic COSM1029712 srow:768311
35811 chr21 28337932 28337934 cosmic COSM1167729 srow:768312
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  • 25 of 65 featuress

Omics Overlaps

Dmrid Omic Set Data Plot
35811 cellmeth_recounts PrEC: 16, LNCaP: 55, DU145: 46
35811 cellmeth_diffreps_PrECvsLNCaP A=1, B=32, Length=420, Event=Up, log2FC=5, padj=9.42329707461185e-08
35811 cellmeth_diffreps_PrECvsDU145 A=0, B=33, Length=480, Event=Up, log2FC=Inf, padj=1.57283127802593e-09
35811 cellexp id=ENSG00000154736, name=ADAMTS5, PrEC=3, str=158, LNCaP=2, str=0, DU145=0, str=0
35811 tcgaexp gene=ADAMTS5, entrez=11096, pos=chr21:28290231-28339439(-), B=1164, L=455, M=372, H=332