DMR 35991 chr22:19510751-19512450 (1700bp)

DMR Stats
Positionchr22:19510751-19512450 (View on UCSC)
Width1700bp
Genomic Contextpromoter
Nearest GenesCLDN5 (0bp away)
ANODEV p-value3.4320578817e-05
FrequenciesBenign: 0.0 (0.0%), Low: 2.0 (33.33%), High: 5.0 (55.56 %)
Frequent?

Region Count Boxplot

Region Overview

Gene Overlaps

Dmrid Gene Symbol Gene Id Isoform Id Isoform Chr Isoform Start Isoform End Isoform Strand Overlap Bp Query Overlap Per Isoform Overlap Per Noncoding Promoter Per Exonintron Per End Per
35991 CLDN5 19066 uc002zpu.2 chr22 19510547 19512860 - 1700 100.0 0.03 0 5.29 E1 (0), I1 (22.71), E2 (77.35) 46.82
35991 CLDN5 19066 uc010grr.2 chr22 19510547 19512860 - 1700 100.0 0.03 0 5.29 E1 (100) 46.82
  • 2 geness

Feature Overlaps

Dmrid Feature Chr Feature Start Feature End Set Name Fields
35991 chr22 19510286 19510755 wgEncodeRegDnaseClusteredV2 19 score:380, srow:756390
35991 chr22 19510766 19512355 wgEncodeRegDnaseClusteredV2 79 score:1000, srow:756391
35991 chr22 19512406 19513595 wgEncodeRegDnaseClusteredV2 40 score:435, srow:756392
35991 chr22 19508864 19511603 wgEncodeRegTfbsClusteredV3 POLR2A score:651, expCount:8, expNums:206,207,228,229,520,523,526,527, expScores:185,247,260,358,184,191,334,169, srow:2634106
35991 chr22 19510402 19510885 wgEncodeRegTfbsClusteredV3 SETDB1 score:144, expCount:1, expNums:533, expScores:144, srow:2634108
35991 chr22 19510725 19511940 wgEncodeRegTfbsClusteredV3 EZH2 score:387, expCount:5, expNums:6,15,36,40,43, expScores:387,332,227,211,384, srow:2634109
35991 chr22 19510763 19511138 wgEncodeRegTfbsClusteredV3 TBP score:205, expCount:1, expNums:359, expScores:205, srow:2634110
35991 chr22 19510780 19511275 wgEncodeRegTfbsClusteredV3 HMGN3 score:150, expCount:1, expNums:501, expScores:150, srow:2634111
35991 chr22 19510794 19510993 wgEncodeRegTfbsClusteredV3 CTCF score:165, expCount:1, expNums:597, expScores:165, srow:2634112
35991 chr22 19510799 19511414 wgEncodeRegTfbsClusteredV3 CHD1 score:253, expCount:1, expNums:4, expScores:253, srow:2634113
35991 chr22 19511321 19511664 wgEncodeRegTfbsClusteredV3 GABPA score:180, expCount:1, expNums:140, expScores:180, srow:2634114
35991 chr22 19511344 19511616 wgEncodeRegTfbsClusteredV3 CTCF score:158, expCount:2, expNums:677,686, expScores:129,158, srow:2634115
35991 chr22 19511390 19511713 wgEncodeRegTfbsClusteredV3 BACH1 score:215, expCount:1, expNums:341, expScores:215, srow:2634116
35991 chr22 19511442 19511751 wgEncodeRegTfbsClusteredV3 SUZ12 score:106, expCount:1, expNums:358, expScores:106, srow:2634117
35991 chr22 19511445 19511714 wgEncodeRegTfbsClusteredV3 HDAC6 score:128, expCount:1, expNums:28, expScores:128, srow:2634118
35991 chr22 19511621 19512160 wgEncodeRegTfbsClusteredV3 POLR2A score:917, expCount:4, expNums:206,207,461,619, expScores:365,917,543,780, srow:2634119
35991 chr22 19511979 19512434 wgEncodeRegTfbsClusteredV3 CCNT2 score:125, expCount:1, expNums:476, expScores:125, srow:2634120
35991 chr22 19512084 19512339 wgEncodeRegTfbsClusteredV3 ZBTB33 score:147, expCount:1, expNums:246, expScores:147, srow:2634121
35991 chr22 19512421 19512836 wgEncodeRegTfbsClusteredV3 POLR2A score:147, expCount:1, expNums:461, expScores:147, srow:2634122
35991 chr22 19510785 19510814 tfbsConsSites V$PAX4_04 score:739, zScore:1.93, srow:3210573
35991 chr22 19511143 19511149 tfbsConsSites V$EN1_01 score:966, zScore:1.65, srow:3210574
35991 chr22 19511149 19511166 tfbsConsSites V$CMYB_01 score:798, zScore:1.84, srow:3210575
35991 chr22 19511211 19511234 tfbsConsSites V$BRACH_01 score:684, zScore:1.78, srow:3210576
35991 chr22 19511220 19511248 tfbsConsSites V$MYOGNF1_01 score:735, zScore:1.68, srow:3210577
35991 chr22 19511285 19511305 tfbsConsSites V$NRSF_01 score:716, zScore:1.81, srow:3210578
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  • 25 of 140 featuress

Omics Overlaps

Dmrid Omic Set Data Plot
35991 cellmeth_recounts PrEC: 9, LNCaP: 302, DU145: 15
35991 cellmeth_diffreps_PrECvsLNCaP A=11, B=233, Length=1580, Event=Up, log2FC=4.4, padj=0
35991 cellmeth_diffreps_LNCaPvsDU145 A=245.88, B=6.55, Length=1520, Event=Down, log2FC=-5.23, padj=0
35991 cellexp id=ENSG00000184113, name=CLDN5, PrEC=1, str=4, LNCaP=24, str=29, DU145=22, str=5
35991 tcgameth site:cg00811132, B=0.1, L=0.33, H=0.35
35991 tcgameth site:cg06315607, B=0.11, L=0.41, H=0.39
35991 tcgameth site:cg09092054, B=0.06, L=0.37, H=0.42
35991 tcgameth site:cg20486569, B=0.24, L=0.64, H=0.64
35991 tcgameth site:cg21872764, B=0.17, L=0.38, H=0.38
35991 tcgaexp gene=CLDN5, entrez=7122, pos=chr22:19510547-19512860(-), B=1204, L=1315, M=935, H=644