DMR 36437 chrX:133684801-133685450 (650bp)
| DMR Stats | |
|---|---|
| Position | chrX:133684801-133685450 (View on UCSC) |
| Width | 650bp |
| Genomic Context | intron |
| Nearest Genes | LINC00629 (0bp away) |
| ANODEV p-value | 3.44592381434e-05 |
| Frequencies | Benign: 0.0 (0.0%), Low: 6.0 (100.0%), High: 7.0 (77.78 %) |
| Frequent? |
Region Count Boxplot
Region Overview
Gene Overlaps
| Dmrid | Gene Symbol | Gene Id | Isoform Id | Isoform Chr | Isoform Start | Isoform End | Isoform Strand | Overlap Bp | Query Overlap Per | Isoform Overlap Per | Noncoding | Promoter Per | Exonintron Per | End Per |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 36437 | LINC00629 | 31417 | uc004exn.1 | chrX | 133684054 | 133694428 | + | 650 | 100.0 | 0.11 | 1 | 0.0 | E1 (0), I1 (100), E2 (0), I2 (0), E3 (0) | 0.0 |
- 1 genes
Feature Overlaps
| Dmrid | Feature Chr | Feature Start | Feature End | Set | Name | Fields |
|---|---|---|---|---|---|---|
| 36437 | chrX | 133684706 | 133685475 | wgEncodeRegDnaseClusteredV2 | 63 | score:490, srow:1276626 |
| 36437 | chrX | 133684487 | 133684802 | wgEncodeRegTfbsClusteredV3 | MYC | score:176, expCount:1, expNums:575, expScores:176, srow:4366642 |
| 36437 | chrX | 133684597 | 133685262 | wgEncodeRegTfbsClusteredV3 | POLR2A | score:177, expCount:1, expNums:577, expScores:176, srow:4366643 |
| 36437 | chrX | 133684666 | 133684955 | wgEncodeRegTfbsClusteredV3 | ZNF143 | score:248, expCount:1, expNums:361, expScores:248, srow:4366644 |
| 36437 | chrX | 133684754 | 133684993 | wgEncodeRegTfbsClusteredV3 | RAD21 | score:189, expCount:1, expNums:149, expScores:189, srow:4366645 |
| 36437 | chrX | 133684901 | 133685810 | wgEncodeRegTfbsClusteredV3 | EZH2 | score:429, expCount:1, expNums:6, expScores:429, srow:4366646 |
| 36437 | chrX | 133684830 | 133684839 | phastConsElements100way | lod=25 | score:312, srow:10018830 |
| 36437 | chrX | 133684900 | 133684905 | phastConsElements100way | lod=13 | score:247, srow:10018831 |
| 36437 | chrX | 133685209 | 133685213 | phastConsElements100way | lod=21 | score:295, srow:10018832 |
| 36437 | chrX | 133683175 | 133685463 | cpgIsland | CpG: 171 | length:2289, cpgNum:171, gcNum:1213, perCpg:14.9, perGc:53, obsExp:1.09, srow:28326 |
- 10 featuress
Omics Overlaps
| Dmrid | Omic Set | Data | Plot |
|---|---|---|---|
| 36437 | cellmeth_recounts | PrEC: 17, LNCaP: 188, DU145: 0 |  |
| 36437 | cellmeth_diffreps_PrECvsLNCaP | A=19, B=142, Length=700, Event=Up, log2FC=2.9, padj=0 |  |
| 36437 | cellmeth_diffreps_PrECvsDU145 | A=21, B=0, Length=380, Event=Down, log2FC=-Inf, padj=5.26387855513023e-06 |  |
| 36437 | cellmeth_diffreps_LNCaPvsDU145 | A=160.36, B=0, Length=900, Event=Down, log2FC=-Inf, padj=0 |  |
| 36437 | cellexp | id=ENSG00000227060, name=LINC00629, PrEC=5, str=2, LNCaP=4, str=0, DU145=56, str=25 |  |
| 36437 | tcgaexp | gene=IL9R, entrez=3581, pos=chrX:59330252-155240482(+), B=6, L=4, M=6, H=9 |  |
| 36437 | tcgaexp | gene=VAMP7, entrez=6845, pos=chrX:59213949-155173433(+), B=2541, L=2446, M=2565, H=2891 |  |
| 36437 | tcgaexp | gene=SPRY3, entrez=10251, pos=chrX:59100457-155012117(+), B=156, L=117, M=100, H=75 |  |