DMR 36469 chrX:152938351-152938750 (400bp)
| DMR Stats | |
|---|---|
| Position | chrX:152938351-152938750 (View on UCSC) |
| Width | 400bp |
| Genomic Context | promoter |
| Nearest Genes | PNCK (0bp away) |
| ANODEV p-value | 0.0122571579277 |
| Frequencies | Benign: 0.0 (0.0%), Low: 5.0 (83.33%), High: 6.0 (66.67 %) |
| Frequent? |
Region Count Boxplot
Region Overview
Gene Overlaps
| Dmrid | Gene Symbol | Gene Id | Isoform Id | Isoform Chr | Isoform Start | Isoform End | Isoform Strand | Overlap Bp | Query Overlap Per | Isoform Overlap Per | Noncoding | Promoter Per | Exonintron Per | End Per |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 36469 | PNCK | 31596 | uc004fhz.4 | chrX | 152935188 | 152939816 | - | 400 | 100.0 | 0.37 | 0 | 0.0 | E1 (0), I1 (54.5), E2 (17.5), I2 (28.25), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0) | 0.0 |
| 36469 | PNCK | 31596 | uc010nuh.2 | chrX | 152936533 | 152939816 | - | 400 | 100.0 | 2.16 | 0 | 0.0 | E1 (0), I1 (54.5), E2 (17.5), I2 (28.25), E3 (0), I3 (0), E4 (0) | 0.0 |
| 36469 | PNCK | 31596 | uc011myt.2 | chrX | 152935188 | 152938743 | - | 393 | 98.25 | 0.64 | 0 | 100.0 | E1 (16.75), I1 (36), E2 (17.5), I2 (28.25), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0), I11 (0), E12 (0) | 0.0 |
| 36469 | PNCK | 31596 | uc011myu.2 | chrX | 152935188 | 152939816 | - | 400 | 100.0 | 7.0 | 0 | 0.0 | E1 (0), I1 (54.5), E2 (17.5), I2 (28.25), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0), I11 (0), E12 (0) | 0.0 |
| 36469 | PNCK | 31596 | uc011myv.2 | chrX | 152936565 | 152939277 | - | 400 | 100.0 | 7.0 | 0 | 0.0 | E1 (0), I1 (54.5), E2 (45.75), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0) | 0.0 |
| 36469 | PNCK | 31596 | uc011myw.2 | chrX | 152936565 | 152952247 | - | 400 | 100.0 | 0.13 | 0 | 0.0 | E1 (0), I1 (54.5), E2 (45.75), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0) | 0.0 |
- 6 geness
Feature Overlaps
| Dmrid | Feature Chr | Feature Start | Feature End | Set | Name | Fields |
|---|---|---|---|---|---|---|
| 36469 | chrX | 152938186 | 152938415 | wgEncodeRegDnaseClusteredV2 | 4 | score:342, srow:1279970 |
| 36469 | chrX | 152938466 | 152938935 | wgEncodeRegDnaseClusteredV2 | 25 | score:356, srow:1279971 |
| 36469 | chrX | 152938235 | 152938590 | wgEncodeRegTfbsClusteredV3 | BCL3 | score:152, expCount:1, expNums:83, expScores:152, srow:4375273 |
| 36469 | chrX | 152938373 | 152938992 | wgEncodeRegTfbsClusteredV3 | EZH2 | score:262, expCount:1, expNums:43, expScores:262, srow:4375274 |
| 36469 | chrX | 152938548 | 152938911 | wgEncodeRegTfbsClusteredV3 | TEAD4 | score:300, expCount:1, expNums:240, expScores:300, srow:4375275 |
| 36469 | chrX | 152938620 | 152938866 | wgEncodeRegTfbsClusteredV3 | EGR1 | score:1000, expCount:1, expNums:216, expScores:1000, srow:4375276 |
| 36469 | chrX | 152938454 | 152938472 | tfbsConsSites | V$AHRARNT_02 | score:796, zScore:2.14, srow:5787309 |
| 36469 | chrX | 152938464 | 152938464 | cosmic | COSM1599042 | srow:1283168 |
| 36469 | chrX | 152938464 | 152938464 | cosmic | COSM1599043 | srow:1283169 |
| 36469 | chrX | 152938464 | 152938464 | cosmic | COSM1117452 | srow:1283170 |
| 36469 | chrX | 152938464 | 152938464 | cosmic | COSM1117451 | srow:1283171 |
| 36469 | chrX | 152938717 | 152938717 | cosmic | COSM1117453 | srow:1283172 |
| 36469 | chrX | 152938457 | 152938491 | phastConsElements100way | lod=101 | score:450, srow:10078832 |
| 36469 | chrX | 152938496 | 152938507 | phastConsElements100way | lod=80 | score:427, srow:10078833 |
| 36469 | chrX | 152938509 | 152938536 | phastConsElements100way | lod=96 | score:445, srow:10078834 |
| 36469 | chrX | 152938635 | 152939544 | cpgIsland | CpG: 89 | length:910, cpgNum:89, gcNum:593, perCpg:19.6, perGc:65.2, obsExp:0.96, srow:28444 |
| 36469 | chrX | 152936635 | 152938634 | cpgShore | — | values(x.gr)[overs$srow, ]:51495 |
- 17 featuress
Omics Overlaps
| Dmrid | Omic Set | Data | Plot |
|---|---|---|---|
| 36469 | cellmeth_recounts | PrEC: 86, LNCaP: 650, DU145: 15 |  |
| 36469 | cellmeth_diffreps_PrECvsLNCaP | A=446, B=1924, Length=2400, Event=Up, log2FC=2.11, padj=0 |  |
| 36469 | cellmeth_diffreps_PrECvsDU145 | A=291, B=14, Length=900, Event=Down, log2FC=-4.38, padj=0 |  |
| 36469 | cellmeth_diffreps_LNCaPvsDU145 | A=2076.09, B=35.55, Length=2680, Event=Down, log2FC=-5.87, padj=0 |  |
| 36469 | cellexp | id=ENSG00000130822, name=PNCK, PrEC=12, str=128, LNCaP=56, str=21, DU145=13, str=4 |  |
| 36469 | tcgaexp | gene=IL9R, entrez=3581, pos=chrX:59330252-155240482(+), B=6, L=4, M=6, H=9 |  |
| 36469 | tcgaexp | gene=VAMP7, entrez=6845, pos=chrX:59213949-155173433(+), B=2541, L=2446, M=2565, H=2891 |  |
| 36469 | tcgaexp | gene=SPRY3, entrez=10251, pos=chrX:59100457-155012117(+), B=156, L=117, M=100, H=75 |  |
| 36469 | tcgaexp | gene=PNCK, entrez=139728, pos=chrX:152935188-152952247(-), B=1101, L=908, M=471, H=345 |  |