DMR 36479 chrX:153688851-153689150 (300bp)
| DMR Stats | |
|---|---|
| Position | chrX:153688851-153689150 (View on UCSC) |
| Width | 300bp |
| Genomic Context | exon |
| Nearest Genes | PLXNA3 (0bp away) |
| ANODEV p-value | 0.000475844526809 |
| Frequencies | Benign: 1.0 (14.29%), Low: 6.0 (100.0%), High: 8.0 (88.89 %) |
| Frequent? |
Region Count Boxplot
Region Overview
Gene Overlaps
| Dmrid | Gene Symbol | Gene Id | Isoform Id | Isoform Chr | Isoform Start | Isoform End | Isoform Strand | Overlap Bp | Query Overlap Per | Isoform Overlap Per | Noncoding | Promoter Per | Exonintron Per | End Per |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 36479 | PLXNA3 | 31636 | uc004flm.3 | chrX | 153686623 | 153701985 | + | 300 | 100.0 | 0.97 | 0 | 0.0 | E1 (0), I1 (0), E2 (89), I2 (11.33), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0), I11 (0), E12 (0), I12 (0), E13 (0), I13 (0), E14 (0), I14 (0), E15 (0), I15 (0), E16 (0), I16 (0), E17 (0), I17 (0), E18 (0), I18 (0), E19 (0), I19 (0), E20 (0), I20 (0), E21 (0), I21 (0), E22 (0), I22 (0), E23 (0), I23 (0), E24 (0), I24 (0), E25 (0), I25 (0), E26 (0), I26 (0), E27 (0), I27 (0), E28 (0), I28 (0), E29 (0), I29 (0), E30 (0), I30 (0), E31 (0), I31 (0), E32 (0), I32 (0), E33 (0) | 0.0 |
- 1 genes
Feature Overlaps
| Dmrid | Feature Chr | Feature Start | Feature End | Set | Name | Fields |
|---|---|---|---|---|---|---|
| 36479 | chrX | 153688666 | 153689070 | wgEncodeRegDnaseClusteredV2 | 9 | score:412, srow:1280538 |
| 36479 | chrX | 153688641 | 153689070 | wgEncodeRegTfbsClusteredV3 | CTCF | score:492, expCount:27, expNums:16,37,39,42,44,597,628,630,635,636,639,641,642,643,645,646,657,658,659,664,669,675,678,682,683,686,687, expScores:118,217,228,97,123,401,215,152,477,238,184,144,151,408,492,272,183,99,153,179,212,187,187,336,315,180,235, srow:4377471 |
| 36479 | chrX | 153688801 | 153689396 | wgEncodeRegTfbsClusteredV3 | ZNF263 | score:232, expCount:1, expNums:368, expScores:232, srow:4377472 |
| 36479 | chrX | 153688860 | 153688875 | tfbsConsSites | V$TAL1ALPHAE47_01 | score:884, zScore:2.05, srow:5790880 |
| 36479 | chrX | 153688860 | 153688875 | tfbsConsSites | V$TAL1BETAITF2_01 | score:860, zScore:1.96, srow:5790881 |
| 36479 | chrX | 153688864 | 153688883 | tfbsConsSites | V$P53_01 | score:671, zScore:1.64, srow:5790882 |
| 36479 | chrX | 153688913 | 153688923 | tfbsConsSites | V$SREBP1_02 | score:817, zScore:1.76, srow:5790883 |
| 36479 | chrX | 153688994 | 153689012 | tfbsConsSites | V$HNF4_01 | score:818, zScore:1.87, srow:5790884 |
| 36479 | chrX | 153689000 | 153689017 | tfbsConsSites | V$MIF1_01 | score:797, zScore:2.28, srow:5790885 |
| 36479 | chrX | 153688868 | 153688868 | cosmic | COSM612111 | srow:1285257 |
| 36479 | chrX | 153689015 | 153689015 | cosmic | COSM756806 | srow:1285258 |
| 36479 | chrX | 153689044 | 153689044 | cosmic | COSM1331134 | srow:1285259 |
| 36479 | chrX | 153689059 | 153689059 | cosmic | COSM314271 | srow:1285260 |
| 36479 | chrX | 153689073 | 153689073 | cosmic | COSM1262562 | srow:1285261 |
| 36479 | chrX | 153689079 | 153689079 | cosmic | COSM1118041 | srow:1285262 |
| 36479 | chrX | 153689091 | 153689091 | cosmic | COSM462281 | srow:1285263 |
| 36479 | chrX | 153689118 | 153689118 | cosmic | COSM132820 | srow:1285264 |
| 36479 | chrX | 153688848 | 153688858 | phastConsElements100way | lod=106 | score:455, srow:10086134 |
| 36479 | chrX | 153688860 | 153688876 | phastConsElements100way | lod=191 | score:513, srow:10086135 |
| 36479 | chrX | 153688879 | 153688894 | phastConsElements100way | lod=155 | score:493, srow:10086136 |
| 36479 | chrX | 153688896 | 153688900 | phastConsElements100way | lod=47 | score:375, srow:10086137 |
| 36479 | chrX | 153688902 | 153688918 | phastConsElements100way | lod=178 | score:506, srow:10086138 |
| 36479 | chrX | 153688920 | 153688924 | phastConsElements100way | lod=78 | score:425, srow:10086139 |
| 36479 | chrX | 153688926 | 153688951 | phastConsElements100way | lod=257 | score:543, srow:10086140 |
| 36479 | chrX | 153688953 | 153688954 | phastConsElements100way | lod=30 | score:330, srow:10086141 |
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Omics Overlaps
| Dmrid | Omic Set | Data | Plot |
|---|---|---|---|
| 36479 | cellmeth_recounts | PrEC: 9, LNCaP: 291, DU145: 4 |  |
| 36479 | cellmeth_diffreps_PrECvsLNCaP | A=56, B=468, Length=1120, Event=Up, log2FC=3.06, padj=0 |  |
| 36479 | cellmeth_diffreps_PrECvsDU145 | A=47, B=9, Length=380, Event=Down, log2FC=-2.38, padj=8.06003608199408e-06 |  |
| 36479 | cellmeth_diffreps_LNCaPvsDU145 | A=777.2, B=29, Length=1740, Event=Down, log2FC=-4.74, padj=0 |  |
| 36479 | cellexp | id=ENSG00000130827, name=PLXNA3, PrEC=3081, str=15492, LNCaP=1753, str=667, DU145=1430, str=716 |  |
| 36479 | tcgaexp | gene=IL9R, entrez=3581, pos=chrX:59330252-155240482(+), B=6, L=4, M=6, H=9 |  |
| 36479 | tcgaexp | gene=VAMP7, entrez=6845, pos=chrX:59213949-155173433(+), B=2541, L=2446, M=2565, H=2891 |  |
| 36479 | tcgaexp | gene=SPRY3, entrez=10251, pos=chrX:59100457-155012117(+), B=156, L=117, M=100, H=75 |  |
| 36479 | tcgaexp | gene=PLXNA3, entrez=55558, pos=chrX:153686623-153701985(+), B=2356, L=3392, M=3235, H=4121 |  |