DMR Stats
Positionchr1:900901-901350 (View on UCSC)
Width450bp
Genomic Contextpromoter
Nearest GenesKLHL17 (0bp away)
ANODEV p-value0.00156845987141
FrequenciesBenign: 2.0 (28.57%), Low: 3.0 (50.0%), High: 9.0 (100.0 %)
Frequent?

Region Count Boxplot

Region Overview

Gene Overlaps

Dmrid Gene Symbol Gene Id Isoform Id Isoform Chr Isoform Start Isoform End Isoform Strand Overlap Bp Query Overlap Per Isoform Overlap Per Noncoding Promoter Per Exonintron Per End Per
36494 KLHL17 32 uc001aca.2 chr1 895967 901099 + 199 44.22 0.17 0 0.0 E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0), I11 (0), E12 (44.22) 100.0
36494 KLHL17 32 uc001acc.2 chr1 897461 901099 + 199 44.22 0.07 1 0.0 E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (44.22) 100.0
  • 2 geness

Feature Overlaps

Dmrid Feature Chr Feature Start Feature End Set Name Fields
36494 chr1 901146 902510 wgEncodeRegDnaseClusteredV2 118 score:1000, srow:172
36494 chr1 901074 901083 tfbsConsSites V$FOXO1_01 score:947, zScore:1.64, srow:99
36494 chr1 901055 901061 phastConsElements100way lod=38 score:354, srow:2535
36494 chr1 901074 901079 phastConsElements100way lod=24 score:308, srow:2536
36494 chr1 901090 901094 phastConsElements100way lod=13 score:247, srow:2537
36494 chr1 894314 902654 cpgIsland CpG: 615 length:8341, cpgNum:615, gcNum:5505, perCpg:14.7, perGc:66, obsExp:0.68, srow:20
  • 6 featuress

Omics Overlaps

Dmrid Omic Set Data Plot
36494 cellmeth_recounts PrEC: 70, LNCaP: 151, DU145: 9
36494 cellmeth_diffreps_PrECvsDU145 A=1293, B=48, Length=2460, Event=Down, log2FC=-4.75, padj=0
36494 cellmeth_diffreps_LNCaPvsDU145 A=4225.93, B=95.41, Length=4980, Event=Down, log2FC=-5.47, padj=0
36494 cellexp id=ENSG00000187961, name=KLHL17, PrEC=1221, str=1352, LNCaP=2587, str=1038, DU145=815, str=695
36494 tcgameth site:cg03041482, B=0.89, L=0.89, H=0.88
36494 tcgaexp gene=SRSF10, entrez=10772, pos=chr1:36273-24306953(-), B=3487, L=3388, M=3432, H=4019
36494 tcgaexp gene=KLHL17, entrez=339451, pos=chr1:895967-901099(+), B=184, L=277, M=287, H=330
36494 tcgaexp gene=LOC100133331, entrez=100133331, pos=chr1:322037-180753553(-), B=268, L=328, M=271, H=305