DMR 36495 chr1:1047851-1048050 (200bp)
| DMR Stats | |
|---|---|
| Position | chr1:1047851-1048050 (View on UCSC) |
| Width | 200bp |
| Genomic Context | intron |
| Nearest Genes | C1orf159 (0bp away) |
| ANODEV p-value | 0.0191035378546 |
| Frequencies | Benign: 6.0 (85.71%), Low: 6.0 (100.0%), High: 9.0 (100.0 %) |
| Frequent? |
Region Count Boxplot
Region Overview
Gene Overlaps
| Dmrid | Gene Symbol | Gene Id | Isoform Id | Isoform Chr | Isoform Start | Isoform End | Isoform Strand | Overlap Bp | Query Overlap Per | Isoform Overlap Per | Noncoding | Promoter Per | Exonintron Per | End Per |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 36495 | C1orf159 | 40 | uc001acr.2 | chr1 | 1017198 | 1051736 | - | 200 | 100.0 | 0.06 | 1 | 0.0 | E1 (0), I1 (100), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0), I11 (0), E12 (0) | 0.0 |
| 36495 | C1orf159 | 40 | uc001acs.2 | chr1 | 1017198 | 1051736 | - | 200 | 100.0 | 0.06 | 1 | 0.0 | E1 (0), I1 (100), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0) | 0.0 |
| 36495 | C1orf159 | 40 | uc001act.2 | chr1 | 1017198 | 1051736 | - | 200 | 100.0 | 0.06 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (100), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0), I11 (0), E12 (0) | 0.0 |
| 36495 | C1orf159 | 40 | uc001acu.2 | chr1 | 1017198 | 1051736 | - | 200 | 100.0 | 0.43 | 0 | 0.0 | E1 (0), I1 (100), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0) | 0.0 |
- 4 geness
Feature Overlaps
| Dmrid | Feature Chr | Feature Start | Feature End | Set | Name | Fields |
|---|---|---|---|---|---|---|
| 36495 | chr1 | 1047538 | 1047853 | wgEncodeRegTfbsClusteredV3 | YY1 | score:158, expCount:1, expNums:245, expScores:158, srow:1817 |
| 36495 | chr1 | 1047659 | 1048155 | wgEncodeRegTfbsClusteredV3 | E2F6 | score:316, expCount:2, expNums:215,495, expScores:288,316, srow:1818 |
| 36495 | chr1 | 1047719 | 1048156 | wgEncodeRegTfbsClusteredV3 | MAX | score:599, expCount:1, expNums:223, expScores:599, srow:1819 |
| 36495 | chr1 | 1046341 | 1048340 | cpgShore | — | values(x.gr)[overs$srow, ]:74 |
- 4 featuress
Omics Overlaps
| Dmrid | Omic Set | Data | Plot |
|---|---|---|---|
| 36495 | cellmeth_recounts | PrEC: 42, LNCaP: 34, DU145: 8 |  |
| 36495 | cellmeth_diffreps_PrECvsLNCaP | A=271, B=77, Length=740, Event=Down, log2FC=-1.82, padj=0 |  |
| 36495 | cellmeth_diffreps_PrECvsDU145 | A=315, B=36, Length=1220, Event=Down, log2FC=-3.13, padj=0 |  |
| 36495 | cellmeth_diffreps_LNCaPvsDU145 | A=57.73, B=12.16, Length=380, Event=Down, log2FC=-2.25, padj=3.64763319884014e-06 |  |
| 36495 | cellexp | id=ENSG00000131591, name=C1orf159, PrEC=1294, str=1200, LNCaP=732, str=630, DU145=877, str=928 |  |
| 36495 | tcgaexp | gene=SRSF10, entrez=10772, pos=chr1:36273-24306953(-), B=3487, L=3388, M=3432, H=4019 |  |
| 36495 | tcgaexp | gene=C1orf159, entrez=54991, pos=chr1:1017198-1051736(-), B=378, L=413, M=410, H=446 |  |
| 36495 | tcgaexp | gene=LOC100133331, entrez=100133331, pos=chr1:322037-180753553(-), B=268, L=328, M=271, H=305 |  |