DMR 36497 chr1:1138751-1138900 (150bp)
| DMR Stats | |
|---|---|
| Position | chr1:1138751-1138900 (View on UCSC) |
| Width | 150bp |
| Genomic Context | 3' end |
| Nearest Genes | TNFRSF18 (0bp away) |
| ANODEV p-value | 0.00739637748958 |
| Frequencies | Benign: 0.0 (0.0%), Low: 0.0 (0.0%), High: 3.0 (33.33 %) |
| Frequent? |
Region Count Boxplot
Region Overview
Gene Overlaps
| Dmrid | Gene Symbol | Gene Id | Isoform Id | Isoform Chr | Isoform Start | Isoform End | Isoform Strand | Overlap Bp | Query Overlap Per | Isoform Overlap Per | Noncoding | Promoter Per | Exonintron Per | End Per |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 36497 | TNFRSF18 | 49 | uc001ada.3 | chr1 | 1138888 | 1141060 | - | 13 | 8.67 | 0.43 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (8.67) | 100.0 |
| 36497 | TNFRSF18 | 49 | uc001adb.3 | chr1 | 1138888 | 1142089 | - | 13 | 8.67 | 0.25 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (8.67) | 100.0 |
| 36497 | TNFRSF18 | 49 | uc001adc.3 | chr1 | 1138888 | 1142089 | - | 13 | 8.67 | 0.12 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (8.67) | 100.0 |
| 36497 | TNFRSF18 | 49 | uc001add.3 | chr1 | 1138888 | 1142089 | - | 13 | 8.67 | 0.56 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (8.67) | 100.0 |
- 4 geness
Feature Overlaps
| Dmrid | Feature Chr | Feature Start | Feature End | Set | Name | Fields |
|---|---|---|---|---|---|---|
| 36497 | chr1 | 1138726 | 1138935 | wgEncodeRegDnaseClusteredV2 | 4 | score:370, srow:420 |
| 36497 | chr1 | 1138895 | 1138904 | tfbsConsSites | V$NKX22_01 | score:896, zScore:2.06, srow:674 |
| 36497 | chr1 | 1137157 | 1139156 | cpgShore | — | values(x.gr)[overs$srow, ]:90 |
- 3 featuress
Omics Overlaps
| Dmrid | Omic Set | Data | Plot |
|---|---|---|---|
| 36497 | cellmeth_recounts | PrEC: 2, LNCaP: 4, DU145: 0 |  |
| 36497 | cellexp | id=ENSG00000186891, name=TNFRSF18, PrEC=6, str=5, LNCaP=158, str=51, DU145=81, str=37 |  |
| 36497 | tcgaexp | gene=TNFRSF18, entrez=8784, pos=chr1:1138888-1142089(-), B=56, L=100, M=100, H=116 |  |
| 36497 | tcgaexp | gene=SRSF10, entrez=10772, pos=chr1:36273-24306953(-), B=3487, L=3388, M=3432, H=4019 |  |
| 36497 | tcgaexp | gene=LOC100133331, entrez=100133331, pos=chr1:322037-180753553(-), B=268, L=328, M=271, H=305 |  |