DMR 365 chr1:89527301-89527450 (150bp)
| DMR Stats | |
|---|---|
| Position | chr1:89527301-89527450 (View on UCSC) |
| Width | 150bp |
| Genomic Context | intron |
| Nearest Genes | GBP1 (0bp away) |
| ANODEV p-value | 0.0195455921652 |
| Frequencies | Benign: 0.0 (0.0%), Low: 0.0 (0.0%), High: 0.0 (0.0 %) |
| Frequent? |
Region Count Boxplot
Region Overview
Gene Overlaps
| Dmrid | Gene Symbol | Gene Id | Isoform Id | Isoform Chr | Isoform Start | Isoform End | Isoform Strand | Overlap Bp | Query Overlap Per | Isoform Overlap Per | Noncoding | Promoter Per | Exonintron Per | End Per |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 365 | GBP1 | 1129 | uc001dmx.2 | chr1 | 89517987 | 89531043 | - | 150 | 100.0 | 0.28 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (100), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0) | 0.0 |
- 1 genes
Feature Overlaps
Omics Overlaps
| Dmrid | Omic Set | Data | Plot |
|---|---|---|---|
| 365 | cellmeth_recounts | PrEC: 0, LNCaP: 0, DU145: 3 |  |
| 365 | cellexp | id=ENSG00000117228, name=GBP1, PrEC=543, str=837, LNCaP=49, str=86, DU145=209, str=975 |  |
| 365 | tcgaexp | gene=GBP1, entrez=2633, pos=chr1:89517987-89531043(-), B=1910, L=1148, M=1117, H=1252 |  |
| 365 | tcgaexp | gene=LOC100133331, entrez=100133331, pos=chr1:322037-180753553(-), B=268, L=328, M=271, H=305 |  |