DMR 36501 chr1:1239401-1239600 (200bp)

DMR Stats
Positionchr1:1239401-1239600 (View on UCSC)
Width200bp
Genomic Contextexon
Nearest GenesACAP3 (0bp away)
ANODEV p-value0.00247777806306
FrequenciesBenign: 0.0 (0.0%), Low: 1.0 (16.67%), High: 9.0 (100.0 %)
Frequent?

Region Count Boxplot

Region Overview

Gene Overlaps

Dmrid Gene Symbol Gene Id Isoform Id Isoform Chr Isoform Start Isoform End Isoform Strand Overlap Bp Query Overlap Per Isoform Overlap Per Noncoding Promoter Per Exonintron Per End Per
36501 ACAP3 56 uc001aea.2 chr1 1227764 1241309 - 200 100.0 0.09 0 0.0 E1 (67.5), I1 (32.5), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0), I11 (0), E12 (0), I12 (0), E13 (0), I13 (0), E14 (0), I14 (0), E15 (0), I15 (0), E16 (0), I16 (0), E17 (0), I17 (0), E18 (0), I18 (0), E19 (0), I19 (0), E20 (0), I20 (0), E21 (0), I21 (0), E22 (0) 0.0
36501 ACAP3 56 uc001aeb.2 chr1 1227764 1243269 - 200 100.0 0.07 0 0.0 E1 (0), I1 (39), E2 (29), I2 (32.5), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0), I11 (0), E12 (0), I12 (0), E13 (0), I13 (0), E14 (0), I14 (0), E15 (0), I15 (0), E16 (0), I16 (0), E17 (0), I17 (0), E18 (0), I18 (0), E19 (0), I19 (0), E20 (0), I20 (0), E21 (0), I21 (0), E22 (0), I22 (0), E23 (0), I23 (0), E24 (0) 0.0
36501 ACAP3 56 uc001aec.1 chr1 1234124 1244989 - 200 100.0 0.09 0 0.0 E1 (0), I1 (39), E2 (29), I2 (32.5), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0) 0.0
  • 3 geness

Feature Overlaps

Dmrid Feature Chr Feature Start Feature End Set Name Fields
36501 chr1 1239221 1239490 wgEncodeRegDnaseClusteredV2 9 score:255, srow:532
36501 chr1 1239586 1239855 wgEncodeRegDnaseClusteredV2 3 score:301, srow:533
36501 chr1 1239270 1239418 wgEncodeRegTfbsClusteredV3 ZNF263 score:296, expCount:1, expNums:368, expScores:296, srow:2728
36501 chr1 1239275 1239514 wgEncodeRegTfbsClusteredV3 USF1 score:157, expCount:1, expNums:265, expScores:157, srow:2729
36501 chr1 1239462 1239472 tfbsConsSites V$EVI1_02 score:862, zScore:2.02, srow:951
36501 chr1 1239505 1239505 cosmic COSM894833 srow:608
36501 chr1 1239517 1239517 cosmic COSM1151807 srow:609
36501 chr1 1239464 1239471 phastConsElements100way lod=77 score:423, srow:4975
36501 chr1 1239473 1239483 phastConsElements100way lod=52 score:385, srow:4976
36501 chr1 1239485 1239489 phastConsElements100way lod=35 score:345, srow:4977
36501 chr1 1239491 1239495 phastConsElements100way lod=25 score:312, srow:4978
36501 chr1 1239497 1239498 phastConsElements100way lod=18 score:280, srow:4979
36501 chr1 1239503 1239510 phastConsElements100way lod=59 score:397, srow:4980
36501 chr1 1239512 1239513 phastConsElements100way lod=24 score:308, srow:4981
36501 chr1 1239515 1239516 phastConsElements100way lod=17 score:274, srow:4982
36501 chr1 1239521 1239526 phastConsElements100way lod=56 score:392, srow:4983
36501 chr1 1238401 1240400 cpgShelf — values(x.gr)[overs$srow, ]:64
  • 17 featuress

Omics Overlaps

Dmrid Omic Set Data Plot
36501 cellmeth_recounts PrEC: 29, LNCaP: 111, DU145: 5
36501 cellmeth_diffreps_PrECvsLNCaP A=7, B=39, Length=280, Event=Up, log2FC=2.48, padj=3.76093428258939e-05
36501 cellmeth_diffreps_PrECvsDU145 A=44, B=4, Length=400, Event=Down, log2FC=-3.46, padj=4.3150681074872e-08
36501 cellmeth_diffreps_LNCaPvsDU145 A=131.49, B=3.74, Length=820, Event=Down, log2FC=-5.14, padj=0
36501 cellexp id=ENSG00000131584, name=ACAP3, PrEC=2300, str=4555, LNCaP=5904, str=2324, DU145=1592, str=1301
36501 tcgaexp gene=SRSF10, entrez=10772, pos=chr1:36273-24306953(-), B=3487, L=3388, M=3432, H=4019
36501 tcgaexp gene=ACAP3, entrez=116983, pos=chr1:1227764-1244989(-), B=1247, L=1285, M=1235, H=1331
36501 tcgaexp gene=LOC100133331, entrez=100133331, pos=chr1:322037-180753553(-), B=268, L=328, M=271, H=305