DMR 36503 chr1:1322301-1322450 (150bp)
| DMR Stats | |
|---|---|
| Position | chr1:1322301-1322450 (View on UCSC) |
| Width | 150bp |
| Genomic Context | exon |
| Nearest Genes | CCNL2 (0bp away) |
| ANODEV p-value | 0.00421138426336 |
| Frequencies | Benign: 7.0 (100.0%), Low: 6.0 (100.0%), High: 9.0 (100.0 %) |
| Frequent? |
Region Count Boxplot
Region Overview
Gene Overlaps
| Dmrid | Gene Symbol | Gene Id | Isoform Id | Isoform Chr | Isoform Start | Isoform End | Isoform Strand | Overlap Bp | Query Overlap Per | Isoform Overlap Per | Noncoding | Promoter Per | Exonintron Per | End Per |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 36503 | CCNL2 | 64 | uc001aff.1 | chr1 | 1321091 | 1328183 | - | 150 | 100.0 | 0.07 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (100) | 0.0 |
| 36503 | CCNL2 | 64 | uc001afg.1 | chr1 | 1321091 | 1333722 | - | 150 | 100.0 | 0.43 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (100) | 0.0 |
| 36503 | CCNL2 | 64 | uc001afi.2 | chr1 | 1321091 | 1334718 | - | 150 | 100.0 | 0.03 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (100) | 0.0 |
| 36503 | CCNL2 | 64 | uc001afj.2 | chr1 | 1321091 | 1334718 | - | 150 | 100.0 | 0.02 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0), I11 (0), E12 (100) | 0.0 |
| 36503 | CCNL2 | 64 | uc010nym.1 | chr1 | 1321091 | 1327029 | - | 150 | 100.0 | 0.02 | 1 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (100) | 0.0 |
- 5 geness
Feature Overlaps
| Dmrid | Feature Chr | Feature Start | Feature End | Set | Name | Fields |
|---|---|---|---|---|---|---|
| 36503 | chr1 | 1322086 | 1322395 | wgEncodeRegDnaseClusteredV2 | 4 | score:256, srow:612 |
| 36503 | chr1 | 1321113 | 1322513 | wgEncodeRegTfbsClusteredV3 | POLR2A | score:485, expCount:4, expNums:32,105,130,229, expScores:168,485,256,442, srow:3395 |
| 36503 | chr1 | 1322320 | 1322719 | wgEncodeRegTfbsClusteredV3 | NR2F2 | score:413, expCount:1, expNums:225, expScores:413, srow:3397 |
| 36503 | chr1 | 1322375 | 1322386 | tfbsConsSites | V$AREB6_03 | score:892, zScore:1.95, srow:1371 |
| 36503 | chr1 | 1322388 | 1322398 | tfbsConsSites | V$CP2_01 | score:899, zScore:2.07, srow:1372 |
| 36503 | chr1 | 1320645 | 1322644 | cpgShore | — | values(x.gr)[overs$srow, ]:135 |
- 6 featuress
Omics Overlaps
| Dmrid | Omic Set | Data | Plot |
|---|---|---|---|
| 36503 | cellmeth_recounts | PrEC: 42, LNCaP: 23, DU145: 5 |  |
| 36503 | cellmeth_diffreps_PrECvsLNCaP | A=759, B=88, Length=1640, Event=Down, log2FC=-3.11, padj=0 |  |
| 36503 | cellmeth_diffreps_PrECvsDU145 | A=758, B=41, Length=1640, Event=Down, log2FC=-4.21, padj=0 |  |
| 36503 | cellexp | id=ENSG00000221978, name=CCNL2, PrEC=4284, str=15627, LNCaP=10189, str=4016, DU145=3487, str=5572 |  |
| 36503 | tcgaexp | gene=SRSF10, entrez=10772, pos=chr1:36273-24306953(-), B=3487, L=3388, M=3432, H=4019 |  |
| 36503 | tcgaexp | gene=CCNL2, entrez=81669, pos=chr1:1321091-1334718(-), B=2982, L=3441, M=3521, H=4527 |  |
| 36503 | tcgaexp | gene=LOC100133331, entrez=100133331, pos=chr1:322037-180753553(-), B=268, L=328, M=271, H=305 |  |