DMR 36505 chr1:1367801-1368050 (250bp)

DMR Stats
Positionchr1:1367801-1368050 (View on UCSC)
Width250bp
Genomic Contextintergenic
Nearest GenesVWA1 (2852bp away)
ANODEV p-value0.00988120200909
FrequenciesBenign: 0.0 (0.0%), Low: 0.0 (0.0%), High: 3.0 (33.33 %)
Frequent?

Region Count Boxplot

Region Overview

Gene Overlaps

Dmrid Gene Symbol Gene Id Isoform Id Isoform Chr Isoform Start Isoform End Isoform Strand Overlap Bp Query Overlap Per Isoform Overlap Per Noncoding Promoter Per Exonintron Per End Per

Feature Overlaps

Dmrid Feature Chr Feature Start Feature End Set Name Fields
36505 chr1 1367626 1368575 wgEncodeRegDnaseClusteredV2 21 score:1000, srow:664
36505 chr1 1366894 1367923 wgEncodeRegTfbsClusteredV3 POLR2A score:1000, expCount:7, expNums:147,191,192,249,445,446,616, expScores:316,748,340,301,209,353,327, srow:3766
36505 chr1 1367206 1367821 wgEncodeRegTfbsClusteredV3 MYBL2 score:281, expCount:1, expNums:186, expScores:281, srow:3773
36505 chr1 1365300 1368767 cpgShelf — values(x.gr)[overs$srow, ]:80
  • 4 featuress

Omics Overlaps

Dmrid Omic Set Data Plot
36505 cellmeth_recounts PrEC: 19, LNCaP: 55, DU145: 3
36505 cellmeth_diffreps_PrECvsDU145 A=38, B=1, Length=420, Event=Down, log2FC=-5.25, padj=2.56051906907383e-09
36505 cellmeth_diffreps_PrECvsDU145 A=35, B=1, Length=580, Event=Down, log2FC=-5.13, padj=1.81683967010991e-08
36505 cellmeth_diffreps_LNCaPvsDU145 A=78.04, B=1.87, Length=760, Event=Down, log2FC=-5.38, padj=0
36505 cellexp id=ENSG00000225285, name=RP4-758J18.10, PrEC=10, str=4, LNCaP=172, str=173, DU145=54, str=21
36505 tcgaexp gene=SRSF10, entrez=10772, pos=chr1:36273-24306953(-), B=3487, L=3388, M=3432, H=4019
36505 tcgaexp gene=LOC100133331, entrez=100133331, pos=chr1:322037-180753553(-), B=268, L=328, M=271, H=305