DMR 36508 chr1:1477601-1477750 (150bp)
| DMR Stats | |
|---|---|
| Position | chr1:1477601-1477750 (View on UCSC) |
| Width | 150bp |
| Genomic Context | 3' end |
| Nearest Genes | SSU72 (0bp away) |
| ANODEV p-value | 0.00167912097161 |
| Frequencies | Benign: 3.0 (42.86%), Low: 4.0 (66.67%), High: 9.0 (100.0 %) |
| Frequent? |
Region Count Boxplot
Region Overview
Gene Overlaps
| Dmrid | Gene Symbol | Gene Id | Isoform Id | Isoform Chr | Isoform Start | Isoform End | Isoform Strand | Overlap Bp | Query Overlap Per | Isoform Overlap Per | Noncoding | Promoter Per | Exonintron Per | End Per |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 36508 | SSU72 | 74 | uc001agd.3 | chr1 | 1477053 | 1510262 | - | 150 | 100.0 | 0.05 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (100), E5 (0) | 100.0 |
- 1 genes
Feature Overlaps
| Dmrid | Feature Chr | Feature Start | Feature End | Set | Name | Fields |
|---|---|---|---|---|---|---|
| 36508 | chr1 | 1477266 | 1478035 | wgEncodeRegDnaseClusteredV2 | 33 | score:514, srow:742 |
| 36508 | chr1 | 1477456 | 1478051 | wgEncodeRegTfbsClusteredV3 | ZNF263 | score:244, expCount:1, expNums:368, expScores:244, srow:4149 |
| 36508 | chr1 | 1476670 | 1478669 | cpgShore | — | values(x.gr)[overs$srow, ]:173 |
- 3 featuress
Omics Overlaps
| Dmrid | Omic Set | Data | Plot |
|---|---|---|---|
| 36508 | cellmeth_recounts | PrEC: 7, LNCaP: 192, DU145: 5 |  |
| 36508 | cellmeth_diffreps_PrECvsLNCaP | A=2318, B=9570, Length=6220, Event=Up, log2FC=2.05, padj=0 |  |
| 36508 | cellmeth_diffreps_PrECvsDU145 | A=393, B=14, Length=1700, Event=Down, log2FC=-4.81, padj=0 |  |
| 36508 | cellmeth_diffreps_LNCaPvsDU145 | A=11675.04, B=164.63, Length=9520, Event=Down, log2FC=-6.15, padj=0 |  |
| 36508 | cellexp | id=ENSG00000160075, name=SSU72, PrEC=6250, str=3004, LNCaP=7955, str=8795, DU145=3456, str=3590 |  |
| 36508 | tcgameth | site:cg13575252, B=0.67, L=0.84, H=0.82 |  |
| 36508 | tcgaexp | gene=SRSF10, entrez=10772, pos=chr1:36273-24306953(-), B=3487, L=3388, M=3432, H=4019 |  |
| 36508 | tcgaexp | gene=SSU72, entrez=29101, pos=chr1:1477053-1510262(-), B=6883, L=8353, M=8488, H=7643 |  |
| 36508 | tcgaexp | gene=LOC100133331, entrez=100133331, pos=chr1:322037-180753553(-), B=268, L=328, M=271, H=305 |  |