DMR 36510 chr1:1951851-1952050 (200bp)
| DMR Stats | |
|---|---|
| Position | chr1:1951851-1952050 (View on UCSC) |
| Width | 200bp |
| Genomic Context | intron |
| Nearest Genes | GABRD (0bp away) |
| ANODEV p-value | 0.000149145283161 |
| Frequencies | Benign: 0.0 (0.0%), Low: 0.0 (0.0%), High: 8.0 (88.89 %) |
| Frequent? |
Region Count Boxplot
Region Overview
Gene Overlaps
| Dmrid | Gene Symbol | Gene Id | Isoform Id | Isoform Chr | Isoform Start | Isoform End | Isoform Strand | Overlap Bp | Query Overlap Per | Isoform Overlap Per | Noncoding | Promoter Per | Exonintron Per | End Per |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 36510 | GABRD | 93 | uc001aip.2 | chr1 | 1950768 | 1962192 | + | 200 | 100.0 | 0.04 | 0 | 0.0 | E1 (0), I1 (100), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0) | 0.0 |
- 1 genes
Feature Overlaps
| Dmrid | Feature Chr | Feature Start | Feature End | Set | Name | Fields |
|---|---|---|---|---|---|---|
| 36510 | chr1 | 1949846 | 1953995 | wgEncodeRegDnaseClusteredV2 | 65 | score:1000, srow:1106 |
| 36510 | chr1 | 1950864 | 1951974 | wgEncodeRegTfbsClusteredV3 | EZH2 | score:494, expCount:6, expNums:15,21,36,38,40,43, expScores:233,494,265,196,448,405, srow:5934 |
| 36510 | chr1 | 1951480 | 1953479 | cpgShore | — | values(x.gr)[overs$srow, ]:241 |
- 3 featuress
Omics Overlaps
| Dmrid | Omic Set | Data | Plot |
|---|---|---|---|
| 36510 | cellmeth_recounts | PrEC: 12, LNCaP: 105, DU145: 3 |  |
| 36510 | cellmeth_diffreps_PrECvsLNCaP | A=21, B=123, Length=860, Event=Up, log2FC=2.55, padj=0 |  |
| 36510 | cellmeth_diffreps_PrECvsDU145 | A=20, B=1, Length=300, Event=Down, log2FC=-4.32, padj=0.000246010682141716 |  |
| 36510 | cellmeth_diffreps_LNCaPvsDU145 | A=126.15, B=1.87, Length=920, Event=Down, log2FC=-6.08, padj=0 |  |
| 36510 | cellexp | id=ENSG00000187730, name=GABRD, PrEC=1, str=0, LNCaP=102, str=30, DU145=192, str=102 |  |
| 36510 | tcgaexp | gene=GABRD, entrez=2563, pos=chr1:1950768-1962192(+), B=12, L=16, M=31, H=79 |  |
| 36510 | tcgaexp | gene=SRSF10, entrez=10772, pos=chr1:36273-24306953(-), B=3487, L=3388, M=3432, H=4019 |  |
| 36510 | tcgaexp | gene=LOC100133331, entrez=100133331, pos=chr1:322037-180753553(-), B=268, L=328, M=271, H=305 |  |
| 36510 | pubmed | gene=GABRD, G=56, GP=0, GC=0, GM=0, GPM=0, GCM=0 |  |