DMR 36517 chr1:2170951-2171350 (400bp)

DMR Stats
Positionchr1:2170951-2171350 (View on UCSC)
Width400bp
Genomic Contextintron
Nearest GenesSKI (0bp away)
ANODEV p-value0.00318624289941
FrequenciesBenign: 2.0 (28.57%), Low: 5.0 (83.33%), High: 8.0 (88.89 %)
Frequent?

Region Count Boxplot

Region Overview

Gene Overlaps

Dmrid Gene Symbol Gene Id Isoform Id Isoform Chr Isoform Start Isoform End Isoform Strand Overlap Bp Query Overlap Per Isoform Overlap Per Noncoding Promoter Per Exonintron Per End Per
36517 SKI 98 uc001aja.4 chr1 2160134 2241652 + 400 100.0 0.66 0 0.0 E1 (0), I1 (100), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0) 0.0
  • 1 genes

Feature Overlaps

Dmrid Feature Chr Feature Start Feature End Set Name Fields

Omics Overlaps

Dmrid Omic Set Data Plot
36517 cellmeth_recounts PrEC: 52, LNCaP: 30, DU145: 6
36517 cellmeth_diffreps_PrECvsLNCaP A=62, B=14, Length=400, Event=Down, log2FC=-2.15, padj=6.81617049602764e-07
36517 cellmeth_diffreps_PrECvsDU145 A=86, B=7, Length=740, Event=Down, log2FC=-3.62, padj=0
36517 cellmeth_diffreps_LNCaPvsDU145 A=11.76, B=0, Length=220, Event=Down, log2FC=-Inf, padj=0.00547907730955432
36517 cellexp id=ENSG00000157933, name=SKI, PrEC=6991, str=5566, LNCaP=6867, str=7040, DU145=2963, str=2843
36517 tcgameth site:cg05156582, B=0.66, L=0.8, H=0.73
36517 tcgameth site:cg08270567, B=0.72, L=0.78, H=0.72
36517 tcgameth site:cg15979171, B=0.77, L=0.87, H=0.83
36517 tcgaexp gene=SKI, entrez=6497, pos=chr1:2160134-2241652(+), B=5692, L=5511, M=5343, H=5668
36517 tcgaexp gene=SRSF10, entrez=10772, pos=chr1:36273-24306953(-), B=3487, L=3388, M=3432, H=4019
36517 tcgaexp gene=LOC100133331, entrez=100133331, pos=chr1:322037-180753553(-), B=268, L=328, M=271, H=305